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NC_061450.1__YP_010302891.1__MPK73_gp102__00102

Bact-Vir

NC_061450.1__YP_010302891.1__MPK73_gp102__00102

Identity

Accession:
NC_061450 ↗
Kingdom:
phage

Quality

66.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rivsvirus› Erwinia_phage_pEa_SNUABM_5

TaxID: 2797313

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 155-272
PDB
Domain cluster: rep: LR595867.1__VUD37913.1__X__00051__D114-206
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 58.0 6.35e-01 99.2% 99.0%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 57.0 6.07e-01 100.0% 100.0%
4r4xA02 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.68 49.0 4.16e-01 73.7% 96.3%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 4.17e-01 77.1% 87.5%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 49.0 5.29e-01 100.0% 96.9%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 47.0 5.15e-01 100.0% 95.8%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 46.0 5.13e-01 100.0% 98.9%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 47.0 4.80e-01 100.0% 80.3%
3mi6B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 50.0 5.32e-01 99.2% 98.1%
4i0nA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.61 56.0 4.29e-01 100.0% 70.5%
5i0dA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 50.0 4.74e-01 99.2% 75.5%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 5.35e-01 98.3% 95.0%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 46.0 4.76e-01 97.5% 88.5%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.58 52.0 4.45e-01 100.0% 95.9%
4j5tA01 2.70.98.110 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycosyl hydrolase family 63, N-terminal domain 0.58 52.0 3.87e-01 100.0% 63.2%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 51.0 4.95e-01 100.0% 86.5%
3ww3A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 50.0 3.98e-01 96.6% 73.3%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 51.0 3.95e-01 100.0% 86.7%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.24e-01 96.6% 95.5%
5ep9D00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 48.0 3.82e-01 95.8% 65.7%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 49.0 3.62e-01 100.0% 80.2%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 49.0 3.88e-01 100.0% 82.4%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.54 45.0 3.63e-01 93.2% 61.3%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 3.37e-01 89.0% 66.3%
2xlgA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 49.0 3.90e-01 98.3% 53.3%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 49.0 4.67e-01 100.0% 94.3%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.54 47.0 4.19e-01 99.2% 92.7%
4g59C01 2.60.40.2920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 4.21e-01 94.9% 89.3%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 43.0 3.29e-01 88.1% 78.6%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 44.0 4.28e-01 98.3% 79.9%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 47.0 4.63e-01 98.3% 93.5%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 43.0 3.06e-01 88.1% 50.7%
1ulvA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 47.0 3.64e-01 100.0% 76.5%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.75e-01 87.3% 93.9%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 45.0 3.43e-01 100.0% 74.4%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.50 42.0 2.71e-01 89.0% 28.8%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004318 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.76 57.0 5.71e-01 99.2% 76.7%
1839945 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.75 59.0 6.41e-01 100.0% 99.0%
4934511 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.75 50.0 4.64e-01 92.4% 55.2%
5068228 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 50.0 5.31e-01 75.4% 96.2%
5040271 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 51.0 4.79e-01 77.1% 97.1%
4937728 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 48.0 5.05e-01 73.7% 98.1%
4979173 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 48.0 5.11e-01 75.4% 96.2%
5037699 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 51.0 5.51e-01 98.3% 97.0%
4368211 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.66 47.0 5.24e-01 100.0% 93.6%
4948691 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 47.0 5.04e-01 73.7% 96.0%
4202481 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.64 48.0 5.21e-01 99.2% 96.8%
4316811 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.64 48.0 5.21e-01 100.0% 97.9%
4926998 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 45.0 4.54e-01 90.7% 72.5%
1204 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.63 47.0 3.59e-01 78.0% 61.4%
390053 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.62 50.0 5.28e-01 99.2% 98.1%
3384789 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.62 43.0 4.46e-01 100.0% 76.4%
3942434 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.61 54.0 5.52e-01 99.2% 100.0%
4289341 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.60 49.0 4.77e-01 100.0% 79.2%
4114243 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.59 48.0 5.04e-01 99.2% 100.0%
3504134 12.1.1.23 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.58 50.0 5.11e-01 99.2% 96.5%
3239826 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.58 48.0 3.93e-01 90.7% 52.7%
3281898 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.58 53.0 3.99e-01 100.0% 84.0%
5079380 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 43.0 4.51e-01 100.0% 85.5%
4532823 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 51.0 4.96e-01 100.0% 86.5%
5001636 12.1.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-L-AF_C 0.57 50.0 4.99e-01 100.0% 91.2%
1144292 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.56 51.0 3.96e-01 100.0% 87.0%
3480732 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 47.0 4.82e-01 98.3% 98.2%
4067201 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.56 50.0 4.98e-01 100.0% 98.4%
5074211 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 51.0 5.02e-01 100.0% 97.6%
3269848 12.1.1.23 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.56 51.0 4.86e-01 100.0% 97.0%
5010079 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 49.0 4.89e-01 98.3% 98.3%
1498212 12.3.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.55 45.0 3.49e-01 91.5% 45.1%
4010814 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.55 49.0 3.76e-01 100.0% 73.9%
3285653 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.55 46.0 3.54e-01 93.2% 55.4%
5038627 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 49.0 3.59e-01 100.0% 85.2%
3622115 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 43.0 3.90e-01 85.6% 61.2%
4575757 12.1.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-L-AF_C 0.54 45.0 4.71e-01 97.5% 97.3%
4604481 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.54 49.0 3.88e-01 100.0% 89.6%
3062996 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 49.0 4.62e-01 100.0% 89.2%
2512673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.53e-01 98.3% 88.9%
3748639 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.53 43.0 3.94e-01 100.0% 65.0%
3237741 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.53 42.0 3.83e-01 99.2% 63.9%
3543640 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.52 43.0 3.96e-01 100.0% 67.7%
3988158 12.3.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.52 44.0 3.36e-01 93.2% 95.2%
3520408 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 45.0 3.96e-01 99.2% 67.1%
3715994 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.50 40.0 3.41e-01 86.4% 74.4%
5032772 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 44.0 4.03e-01 99.2% 98.1%
D2 medium residues 13-67
PDB