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NC_061450.1__YP_010302974.1__MPK73_gp185__00185

Bact-Vir

Identity

Accession:: NC_061450 ↗
Kingdom:: phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rivsvirus› Erwinia_phage_pEa_SNUABM_5

TaxID: 2797313

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-65

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dbdA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.58	46.0	3.91e-01	100.0%	51.4%
2ffjA01	1.10.8.380	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1	0.58	44.0	4.60e-01	88.7%	94.6%
1k32A03	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.56	44.0	4.26e-01	90.3%	79.2%
3gmfA02	1.10.40.110	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 ›	0.54	42.0	3.65e-01	88.7%	68.9%
2raeA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	40.0	3.16e-01	83.9%	88.3%
1w63Q00	3.30.450.60	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.53	42.0	3.35e-01	95.2%	81.1%
2bpoA02	1.20.990.10	Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3	0.51	40.0	3.18e-01	91.9%	66.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4999419	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.65	45.0	2.94e-01	96.8%	16.4%

D2 high residues 78-259

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wznA02	2.20.25.110	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases	0.77	22.0	4.03e-01	71.4%	82.1%
4id2A00	2.40.128.510	Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738	0.61	26.0	2.99e-01	87.9%	50.0%
2rs7A01	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.59	23.0	3.37e-01	80.8%	81.1%
1lqlA02	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.59	30.0	3.87e-01	86.3%	85.4%
2gjvA00	3.30.2000.10	Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like	0.58	42.0	4.82e-01	85.7%	100.0%
4acvA00	3.30.2000.30	Alpha Beta › 2-Layer Sandwich › STM4215-like ›	0.52	34.0	4.07e-01	83.5%	100.0%
6toaF01	3.30.2000.30	Alpha Beta › 2-Layer Sandwich › STM4215-like ›	0.51	36.0	4.13e-01	85.7%	100.0%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2374	5087.3.1.1 ↗	beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht	0.68	20.0	3.29e-01	70.3%	67.6%
4984424	2484.1.1.59 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA	0.64	31.0	2.41e-01	83.5%	20.8%
5013768	330.2.1.5 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181	0.63	28.0	3.73e-01	86.8%	75.8%
3224729	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.61	32.0	4.46e-01	73.6%	100.0%
4199388	504.1.1.1 ↗	a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB	0.59	36.0	3.98e-01	100.0%	74.5%
3786132	330.1.1.4 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22	0.59	31.0	3.44e-01	91.8%	61.4%
5011932	330.2.1.5 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181	0.59	27.0	3.37e-01	87.4%	68.6%
3207181	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.58	29.0	3.95e-01	86.8%	95.6%
3507768	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.56	28.0	3.67e-01	84.1%	84.0%
3513177	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.56	28.0	3.57e-01	85.2%	81.0%
3608271	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.55	33.0	2.66e-01	92.9%	30.1%
3611338	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.53	28.0	3.30e-01	95.1%	71.2%
1558627	243.1.1.15 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL	0.52	30.0	3.41e-01	95.1%	72.3%