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NC_061451.1__YP_010303282.1__MPK74_gp141__00141

Bact-Vir

NC_061451.1__YP_010303282.1__MPK74_gp141__00141

Identity

Accession:
NC_061451 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-97
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20294.5 best KMPT-N 83.2 1.50e-23 81.2% 100.0%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.71 42.0 4.87e-01 86.3% 87.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 42.0 4.97e-01 82.5% 92.6%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 50.0 5.15e-01 88.7% 85.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.77e-01 83.7% 96.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.72e-01 81.2% 87.5%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 38.0 4.68e-01 72.5% 93.8%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.67 30.0 4.06e-01 72.5% 86.8%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 48.0 5.29e-01 97.5% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 5.11e-01 86.3% 100.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 4.96e-01 88.7% 92.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 5.03e-01 80.0% 100.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.05e-01 88.7% 51.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 5.06e-01 86.3% 95.6%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.27e-01 86.3% 67.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 5.04e-01 98.8% 98.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.38e-01 81.2% 84.7%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 43.0 3.67e-01 73.8% 91.7%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.65e-01 88.7% 84.8%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.58 50.0 4.69e-01 95.0% 94.8%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 49.0 3.66e-01 100.0% 70.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 4.21e-01 98.8% 88.5%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.56 43.0 3.57e-01 85.0% 89.9%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.55 42.0 3.15e-01 86.3% 86.6%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.12e-01 85.0% 79.5%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.54 39.0 3.59e-01 76.2% 74.3%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.43e-01 97.5% 71.9%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 4.09e-01 98.8% 89.6%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 35.0 3.15e-01 90.0% 46.2%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 46.0 3.73e-01 98.8% 97.4%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.52 41.0 3.07e-01 86.3% 95.6%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.53e-01 73.8% 94.0%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.52 38.0 3.50e-01 81.2% 96.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.77e-01 98.8% 92.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 4.08e-01 97.5% 79.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895159 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.94e-01 78.8% 98.3%
3931805 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 46.0 5.47e-01 82.5% 100.0%
4031435 4.1.1.143 beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.73 51.0 5.56e-01 87.5% 90.8%
5039349 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.65e-01 78.8% 100.0%
4675879 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 58.0 3.98e-01 90.0% 69.8%
3764000 219.1.1.78 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 0.69 53.0 4.87e-01 88.7% 63.8%
4669027 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 55.0 3.91e-01 87.5% 72.5%
3900236 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.35e-01 95.0% 100.0%
3909202 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.21e-01 97.5% 88.6%
3396896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.10e-01 80.0% 82.7%
3225816 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 55.0 5.78e-01 88.7% 100.0%
3905176 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 50.0 5.38e-01 97.5% 96.9%
3235419 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.02e-01 83.7% 93.3%
3262203 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 48.0 3.87e-01 76.2% 61.9%
3747790 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 44.0 5.00e-01 78.8% 100.0%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 46.0 5.02e-01 88.7% 98.3%
3576443 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 53.0 5.59e-01 90.0% 100.0%
3896519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.75e-01 71.2% 100.0%
3406712 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.23e-01 97.5% 88.7%
3924038 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.48e-01 96.2% 98.7%
3530247 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 5.02e-01 88.7% 96.9%
3575066 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 45.0 5.04e-01 83.7% 100.0%
4200330 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.64 42.0 3.66e-01 86.3% 43.2%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.63 40.0 4.70e-01 81.2% 94.5%
3554670 4.1.1.340 beta barrels › SH3 › SH3 › SH3 › PF28930 0.63 53.0 5.04e-01 93.8% 90.5%
2725406 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 53.0 5.34e-01 97.5% 92.7%
4001172 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 46.0 4.84e-01 88.7% 90.0%
3627275 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.95e-01 82.5% 100.0%
3969959 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.01e-01 98.8% 82.2%
3693741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 5.16e-01 88.7% 100.0%
3979903 4.1.1.465 beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.61 51.0 3.54e-01 92.5% 52.7%
3798188 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 3.80e-01 83.7% 44.8%
3389432 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 49.0 5.09e-01 93.8% 97.3%
3713613 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.68e-01 86.3% 93.8%
3897333 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 50.0 5.05e-01 97.5% 92.5%
3853422 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 50.0 4.63e-01 93.8% 73.3%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.60 40.0 4.29e-01 85.0% 84.6%
3850131 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 51.0 5.02e-01 97.5% 89.4%
3215937 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.50e-01 85.0% 90.0%
3808601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.61e-01 87.5% 94.1%
3269834 220.1.1.95 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.58 42.0 3.69e-01 77.5% 59.2%
3259482 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.33e-01 82.5% 82.4%
4940663 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 39.0 3.58e-01 72.5% 95.2%
3923579 5.1.4.167 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.55 44.0 2.87e-01 86.3% 27.2%
4146384 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.55 36.0 3.13e-01 87.5% 41.5%
4007792 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.52 45.0 3.87e-01 98.8% 93.3%
3473499 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 45.0 4.06e-01 100.0% 93.0%
4007473 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.52 45.0 3.86e-01 98.8% 94.8%
4004354 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.52 45.0 3.83e-01 98.8% 94.8%
1283690 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.51 38.0 2.60e-01 80.0% 88.7%
3509180 9.2.1.3 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.51 38.0 2.95e-01 78.8% 70.3%
3269812 220.1.1.83 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.51 41.0 3.27e-01 90.0% 65.3%
3171956 9.1.1.45 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C 0.50 37.0 3.07e-01 80.0% 68.7%
D2 high residues 135-224
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.66 51.0 4.28e-01 85.6% 49.0%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.66 51.0 4.25e-01 83.3% 50.0%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.65 51.0 4.24e-01 85.6% 47.8%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 53.0 4.84e-01 100.0% 68.6%
6blkC00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.64 57.0 4.76e-01 100.0% 89.2%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 49.0 4.74e-01 92.2% 73.1%
4dn2A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 54.0 4.38e-01 100.0% 72.8%
3ge5A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 54.0 4.47e-01 100.0% 70.5%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 41.0 4.26e-01 83.3% 74.1%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 49.0 4.75e-01 92.2% 77.2%
3g14B00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 52.0 4.32e-01 100.0% 73.0%
3a0rA03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 55.0 4.68e-01 100.0% 88.4%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 4.27e-01 87.8% 71.4%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 51.0 4.74e-01 92.2% 74.1%
4pl9A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 53.0 4.52e-01 100.0% 85.3%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 47.0 4.61e-01 91.1% 78.8%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 43.0 4.26e-01 92.2% 73.1%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 38.0 4.01e-01 72.2% 73.4%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.30e-01 83.3% 86.3%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 43.0 4.21e-01 87.8% 71.0%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.58 49.0 4.01e-01 95.6% 50.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 43.0 4.01e-01 94.4% 62.3%
3d3yA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 44.0 3.27e-01 81.1% 35.3%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 43.0 4.35e-01 84.4% 81.8%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 4.12e-01 90.0% 72.6%
2r4fA02 3.90.770.10 Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.57 49.0 3.89e-01 100.0% 66.0%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 3.40e-01 76.7% 76.2%
1gkxA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 50.0 4.28e-01 100.0% 92.1%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.57 50.0 3.89e-01 100.0% 74.3%
3rkxA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 50.0 3.93e-01 100.0% 64.0%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.57 42.0 3.44e-01 78.9% 97.7%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 49.0 4.54e-01 96.7% 87.0%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 42.0 4.06e-01 82.2% 68.9%
3r6fA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 46.0 4.11e-01 95.6% 63.1%
6d6tA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.56 49.0 3.81e-01 100.0% 79.5%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.56 48.0 3.79e-01 100.0% 79.6%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 37.0 3.97e-01 75.6% 82.4%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.56 44.0 4.17e-01 98.9% 72.2%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.51e-01 91.1% 97.8%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 50.0 3.41e-01 100.0% 34.2%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 49.0 4.22e-01 100.0% 87.7%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.51e-01 91.1% 89.1%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 45.0 3.19e-01 91.1% 70.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 43.0 4.14e-01 87.8% 76.2%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.27e-01 91.1% 96.1%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.37e-01 75.6% 81.2%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 42.0 3.53e-01 85.6% 69.6%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.54 41.0 3.64e-01 83.3% 75.2%
1l7qA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.48e-01 100.0% 89.6%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 48.0 3.80e-01 100.0% 76.4%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.53 45.0 3.68e-01 93.3% 92.3%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.31e-01 100.0% 91.2%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 34.0 3.45e-01 74.4% 65.2%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.74e-01 100.0% 66.1%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 46.0 3.22e-01 100.0% 35.4%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 37.0 3.18e-01 75.6% 88.7%
1t82A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 44.0 3.92e-01 100.0% 71.8%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 40.0 4.06e-01 90.0% 84.4%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.50e-01 100.0% 46.4%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.28e-01 81.1% 59.2%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.50 43.0 3.56e-01 100.0% 80.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 40.0 2.81e-01 90.0% 80.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040992 304.156.1.0 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain 0.72 62.0 6.11e-01 100.0% 87.4%
5049634 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.71 63.0 4.85e-01 100.0% 68.6%
4971929 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.68 59.0 4.85e-01 100.0% 52.7%
4885955 309.1.1.3 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › LuxS 0.67 51.0 4.25e-01 85.6% 47.1%
4993609 873.1.1.19 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › MetOD1 0.67 59.0 4.80e-01 100.0% 51.7%
3875701 274.1.1.38 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.66 45.0 3.34e-01 71.1% 99.1%
4325826 225.1.1.27 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › PF26329 0.66 59.0 4.24e-01 100.0% 71.8%
5050978 873.1.1.13 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.66 56.0 4.92e-01 100.0% 63.0%
4957166 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.65 58.0 4.87e-01 100.0% 89.7%
4946456 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.65 58.0 4.91e-01 100.0% 93.3%
4044550 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.65 43.0 4.56e-01 92.2% 77.5%
4980006 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.64 58.0 4.96e-01 100.0% 91.7%
4934172 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 46.0 5.08e-01 94.4% 97.1%
5003262 304.124.1.10 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Pvc16_N 0.64 56.0 4.63e-01 100.0% 97.1%
5047357 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.63 56.0 4.74e-01 100.0% 91.0%
4984314 304.43.1.6 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M 0.63 48.0 4.85e-01 91.1% 83.3%
5048329 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.63 56.0 4.81e-01 100.0% 92.4%
4413471 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.62 43.0 4.65e-01 90.0% 86.7%
5013930 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.62 55.0 4.55e-01 100.0% 55.5%
3739749 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.62 55.0 4.51e-01 100.0% 89.4%
3969982 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.62 55.0 4.60e-01 100.0% 87.5%
4135761 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.61 48.0 4.35e-01 83.3% 78.3%
4931923 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 43.0 4.48e-01 91.1% 81.2%
3997189 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.61 47.0 4.84e-01 85.6% 88.2%
3211626 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.60 41.0 4.18e-01 80.0% 74.1%
5043492 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 39.0 3.79e-01 100.0% 59.6%
4045155 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.60 47.0 4.46e-01 85.6% 70.0%
3449841 310.3.1.14 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › DUF7049 0.59 47.0 4.68e-01 86.7% 94.7%
3965082 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 52.0 4.67e-01 100.0% 93.8%
3838607 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 53.0 4.51e-01 100.0% 93.1%
3988939 225.1.1.17 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c+His_kinase 0.59 52.0 4.28e-01 100.0% 79.2%
3602264 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 41.0 4.28e-01 98.9% 77.6%
3602910 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 45.0 4.51e-01 98.9% 83.3%
3164685 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.58 51.0 4.37e-01 98.9% 95.2%
4927291 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.58 44.0 4.56e-01 97.8% 88.2%
4934933 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.58 47.0 3.58e-01 91.1% 84.9%
4992480 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 40.0 4.04e-01 94.4% 73.3%
4187841 2003.1.5.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.57 48.0 3.82e-01 100.0% 45.4%
4464468 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.57 44.0 4.15e-01 85.6% 69.1%
5029853 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 41.0 3.74e-01 98.9% 56.7%
3575508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.29e-01 91.1% 76.5%
3602142 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 43.0 4.12e-01 95.6% 71.4%
3730340 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 44.0 4.15e-01 84.4% 97.3%
4335602 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 50.0 4.33e-01 100.0% 90.7%
3959629 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.56 49.0 4.73e-01 100.0% 89.5%
4413612 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 44.0 4.07e-01 95.6% 65.8%
4553370 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 40.0 3.79e-01 91.1% 60.9%
4127225 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.55 43.0 4.05e-01 85.6% 67.0%
4277614 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.55 42.0 3.97e-01 95.6% 68.2%
4205746 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.55 43.0 4.09e-01 95.6% 72.4%
3281361 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 47.0 4.15e-01 100.0% 89.3%
4267547 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 47.0 4.15e-01 100.0% 92.1%
4620141 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.54 48.0 3.43e-01 100.0% 38.2%
4188964 2003.1.5.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.54 49.0 3.78e-01 100.0% 71.1%
4395482 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.54 48.0 3.14e-01 100.0% 28.9%
3642506 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.54 48.0 3.20e-01 100.0% 36.3%
None 0.54 48.0 3.30e-01 100.0% 35.6%
5043656 304.116.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.53 36.0 3.64e-01 91.1% 67.4%
None 0.53 47.0 3.42e-01 100.0% 41.2%
3509317 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.21e-01 100.0% 99.2%
5000877 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.53 47.0 3.09e-01 100.0% 28.2%
4933436 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.53 47.0 3.30e-01 100.0% 38.6%
3288053 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 45.0 3.92e-01 100.0% 83.4%
3477490 2003.1.5.70 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_15 0.51 40.0 2.87e-01 85.6% 73.1%
3482620 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 39.0 2.94e-01 85.6% 81.5%
5034176 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.51 40.0 3.37e-01 86.7% 81.2%
5012937 304.116.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 0.51 35.0 3.47e-01 91.1% 67.4%
3623766 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 4.03e-01 88.9% 97.9%