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NC_061451.1__YP_010303298.1__MPK74_gp157__00157

Bact-Vir

NC_061451.1__YP_010303298.1__MPK74_gp157__00157

Identity

Accession:
NC_061451 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 119-214
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 45.0 5.42e-01 74.0% 100.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 51.0 5.75e-01 96.9% 97.3%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 45.0 5.37e-01 75.0% 100.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 41.0 4.93e-01 71.9% 95.0%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.68 46.0 4.58e-01 70.8% 85.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 44.0 5.05e-01 78.1% 92.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 45.0 5.29e-01 90.6% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 42.0 5.09e-01 72.9% 100.0%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 43.0 4.78e-01 87.5% 82.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 40.0 4.92e-01 70.8% 100.0%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 41.0 4.49e-01 74.0% 75.0%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 44.0 4.83e-01 81.2% 87.8%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 5.14e-01 77.1% 94.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 5.04e-01 87.5% 100.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 41.0 4.92e-01 74.0% 100.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 5.17e-01 76.0% 100.0%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 41.0 4.25e-01 72.9% 67.7%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.85e-01 94.8% 85.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.61e-01 75.0% 85.3%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 35.0 4.29e-01 87.5% 96.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 40.0 4.72e-01 93.8% 100.0%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.91e-01 90.6% 82.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 37.0 4.02e-01 93.8% 72.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 35.0 4.01e-01 88.5% 81.4%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 4.23e-01 91.7% 80.2%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.18e-01 75.0% 76.0%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.69e-01 90.6% 95.2%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 31.0 3.56e-01 74.0% 75.0%
5c33A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 47.0 3.92e-01 100.0% 84.4%
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 29.0 3.03e-01 85.4% 53.8%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.83e-01 86.5% 77.6%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 35.0 3.44e-01 97.9% 62.4%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.62e-01 83.3% 77.9%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.84e-01 91.7% 89.3%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 41.0 2.88e-01 84.4% 95.4%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.62e-01 84.4% 87.8%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 41.0 2.83e-01 87.5% 88.8%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 41.0 2.83e-01 87.5% 82.3%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 39.0 2.89e-01 83.3% 68.1%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3910607 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 52.0 6.18e-01 86.5% 100.0%
3895159 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.49e-01 84.4% 100.0%
3923675 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 48.0 5.70e-01 92.7% 100.0%
3902975 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 45.0 5.40e-01 86.5% 100.0%
538 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.71 51.0 5.75e-01 95.8% 97.3%
3573620 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.71 44.0 5.33e-01 70.8% 100.0%
3918340 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 44.0 5.05e-01 72.9% 87.1%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 43.0 5.26e-01 72.9% 100.0%
3491137 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 43.0 5.24e-01 75.0% 100.0%
3774821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 42.0 5.04e-01 90.6% 96.7%
147681 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 45.0 5.29e-01 89.6% 100.0%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 49.0 5.55e-01 97.9% 100.0%
3554293 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 45.0 5.23e-01 90.6% 96.9%
3572393 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.69 45.0 5.06e-01 91.7% 90.0%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.69 43.0 5.07e-01 89.6% 93.8%
3498145 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 45.0 5.32e-01 89.6% 100.0%
3999508 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 47.0 5.39e-01 92.7% 97.1%
3924338 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 43.0 4.85e-01 72.9% 85.7%
3924337 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 42.0 5.14e-01 88.5% 100.0%
3619599 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 43.0 4.75e-01 75.0% 81.3%
3600486 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.21e-01 91.7% 60.0%
4127826 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 45.0 5.30e-01 84.4% 100.0%
3211367 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 46.0 4.75e-01 87.5% 74.4%
3849311 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 42.0 5.07e-01 88.5% 100.0%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.85e-01 74.0% 87.1%
3554995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 44.0 5.00e-01 90.6% 91.4%
3224981 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 42.0 5.04e-01 90.6% 100.0%
3513923 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.04e-01 86.5% 89.3%
3624017 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 5.07e-01 87.5% 96.9%
3907870 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 4.73e-01 75.0% 79.7%
3557677 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 47.0 5.35e-01 78.1% 100.0%
5022448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.40e-01 92.7% 98.7%
3256431 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.66 36.0 3.85e-01 83.3% 61.3%
3623890 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.66 44.0 4.66e-01 94.8% 77.6%
3391702 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 46.0 4.95e-01 81.2% 87.5%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.65 40.0 3.15e-01 95.8% 28.1%
4134876 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.65 45.0 3.74e-01 92.7% 41.2%
3505111 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.65 51.0 5.17e-01 83.3% 94.6%
3530247 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 43.0 4.99e-01 77.1% 100.0%
1289661 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.65 39.0 4.52e-01 93.8% 86.6%
4483819 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 44.0 4.98e-01 79.2% 95.7%
3810217 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 35.0 4.43e-01 84.4% 100.0%
3494765 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.64 41.0 3.18e-01 75.0% 28.6%
3234274 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 42.0 4.75e-01 89.6% 91.4%
3323984 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.64 41.0 3.32e-01 89.6% 33.5%
3480351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.91e-01 91.7% 92.0%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 38.0 3.86e-01 90.6% 58.9%
1673571 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.64 48.0 5.25e-01 94.8% 100.0%
3554994 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 45.0 4.64e-01 93.8% 78.7%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.63 35.0 4.38e-01 87.5% 100.0%
162525 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 43.0 4.30e-01 86.5% 66.7%
3914346 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 44.0 4.55e-01 91.7% 76.7%
3479350 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 47.0 5.02e-01 82.3% 89.4%
3621642 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 41.0 4.42e-01 75.0% 78.8%
3573262 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.63 46.0 4.72e-01 82.3% 81.1%
165220 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 42.0 4.63e-01 76.0% 89.0%
3502290 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 37.0 4.36e-01 89.6% 91.7%
3995675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 39.0 4.69e-01 85.4% 100.0%
3742291 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 38.0 4.48e-01 85.4% 90.8%
3267345 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 36.0 4.40e-01 86.5% 96.4%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 47.0 3.96e-01 80.2% 51.5%
1930964 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 40.0 4.63e-01 85.4% 94.1%
4218142 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.61 40.0 3.97e-01 96.9% 64.0%
3338134 4.1.1.155 beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.60 45.0 4.93e-01 93.8% 100.0%
3243143 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.47e-01 93.8% 96.9%
3879164 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.58 41.0 4.51e-01 77.1% 94.7%
3215715 10.12.1.5 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.58 36.0 3.47e-01 91.7% 53.6%
3259482 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.44e-01 86.5% 87.1%
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.58 36.0 3.75e-01 88.5% 66.7%
149928 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 42.0 4.14e-01 93.8% 70.8%
3626531 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 44.0 4.55e-01 84.4% 91.1%
4013810 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.17e-01 89.6% 87.8%
D2 high residues 554-642
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 50.0 5.87e-01 76.4% 90.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 49.0 5.61e-01 76.4% 86.4%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 5.27e-01 77.5% 75.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.08e-01 80.9% 81.7%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.71 52.0 4.24e-01 77.5% 74.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 5.07e-01 76.4% 92.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 5.09e-01 76.4% 93.5%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.67 51.0 4.12e-01 80.9% 73.5%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 44.0 4.97e-01 100.0% 89.4%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.76e-01 97.8% 94.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 5.00e-01 77.5% 88.9%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 52.0 4.40e-01 86.5% 83.6%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.64 47.0 4.24e-01 76.4% 93.3%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 55.0 4.51e-01 96.6% 92.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.30e-01 79.8% 76.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 46.0 4.91e-01 79.8% 94.9%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.61 44.0 3.74e-01 75.3% 88.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 50.0 4.20e-01 88.8% 86.1%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.44e-01 100.0% 87.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.61 43.0 4.23e-01 73.0% 73.4%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 39.0 3.69e-01 74.2% 52.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 34.0 4.24e-01 94.4% 96.2%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.18e-01 78.7% 93.6%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 44.0 3.55e-01 78.7% 93.8%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 53.0 3.89e-01 100.0% 72.2%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.62e-01 80.9% 68.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 34.0 3.95e-01 95.5% 81.2%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.55e-01 89.9% 87.9%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 41.0 3.73e-01 76.4% 68.8%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 44.0 3.79e-01 85.4% 59.3%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.28e-01 100.0% 43.7%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.17e-01 83.1% 90.6%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.46e-01 100.0% 53.5%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 42.0 2.90e-01 100.0% 26.1%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.53 40.0 3.31e-01 95.5% 43.9%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.95e-01 85.4% 76.0%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.98e-01 86.5% 77.1%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.86e-01 87.6% 72.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.61e-01 78.7% 83.5%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.70e-01 85.4% 65.8%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 37.0 3.55e-01 75.3% 82.0%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.77e-01 87.6% 74.2%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 35.0 3.45e-01 86.5% 66.3%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 45.0 4.20e-01 98.9% 92.7%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3687023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 59.0 5.67e-01 76.4% 88.0%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 49.0 5.66e-01 76.4% 87.7%
142633 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 49.0 5.61e-01 76.4% 86.4%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 51.0 5.87e-01 80.9% 93.8%
3394215 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 50.0 4.82e-01 77.5% 60.0%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 49.0 5.59e-01 78.7% 90.8%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 48.0 5.44e-01 77.5% 89.2%
4348606 4.1.1.440 beta barrels › SH3 › SH3 › SH3 › PF27165 0.74 51.0 5.95e-01 84.3% 98.5%
4259027 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.70 53.0 4.72e-01 78.7% 98.4%
3950922 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.70 49.0 4.40e-01 71.9% 86.7%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 45.0 5.09e-01 77.5% 90.8%
3700454 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 53.0 4.87e-01 80.9% 98.3%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 44.0 4.95e-01 76.4% 87.7%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 45.0 5.08e-01 78.7% 92.3%
3799750 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.69 48.0 3.61e-01 71.9% 42.5%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 45.0 5.09e-01 77.5% 92.3%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 45.0 5.10e-01 78.7% 92.3%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 44.0 4.95e-01 76.4% 89.2%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 44.0 4.96e-01 76.4% 89.2%
3579141 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.68 48.0 3.21e-01 71.9% 27.4%
3927214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.07e-01 77.5% 50.0%
4213539 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 43.0 4.85e-01 75.3% 87.7%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 45.0 5.02e-01 78.7% 92.3%
3936843 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.68 47.0 3.15e-01 71.9% 26.3%
4292289 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 44.0 4.98e-01 78.7% 92.3%
861 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.67 51.0 4.51e-01 80.9% 97.7%
3951374 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.67 60.0 5.68e-01 97.8% 96.2%
3174822 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 49.0 5.18e-01 76.4% 96.2%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 44.0 4.94e-01 78.7% 92.3%
3925321 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.66 46.0 3.10e-01 71.9% 26.4%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.18e-01 88.8% 90.0%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.14e-01 78.7% 90.5%
3059317 4.1.1.116 beta barrels › SH3 › SH3 › SH3 › SH3_14 0.65 47.0 4.36e-01 75.3% 98.2%
4022153 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.65 56.0 4.74e-01 93.3% 77.2%
3624657 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 46.0 4.31e-01 74.2% 75.5%
5029166 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.20e-01 77.5% 95.9%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.18e-01 86.5% 87.8%
3521904 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.15e-01 88.8% 86.3%
3728855 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.79e-01 77.5% 93.3%
4563194 274.1.1.40 a+b two layers › Pili subunits › Pili subunits › Pili subunits › 17kDa_Anti_2 0.60 43.0 4.28e-01 100.0% 71.3%
4272864 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 40.0 3.65e-01 70.8% 88.3%
3702988 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 41.0 3.87e-01 71.9% 88.6%
859 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.59 44.0 3.95e-01 79.8% 91.9%
3422227 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.57 48.0 3.40e-01 97.8% 47.7%
5082957 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 49.0 3.45e-01 97.8% 54.0%
3738581 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 46.0 3.16e-01 100.0% 27.4%
4128017 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.53e-01 85.4% 51.1%
5036292 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.82e-01 79.8% 88.2%
3792470 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.55 39.0 3.47e-01 74.2% 75.2%
3513352 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.55 39.0 3.57e-01 74.2% 78.3%
5081844 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.92e-01 85.4% 63.3%
4975881 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.63e-01 88.8% 54.1%
4547854 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 4.14e-01 89.9% 88.2%
3552777 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 47.0 2.81e-01 98.9% 18.0%
3587998 243.1.1.102 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28180 0.52 47.0 4.51e-01 100.0% 92.4%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.52 37.0 3.54e-01 74.2% 74.3%
4954094 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.87e-01 89.9% 99.2%
5035149 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.99e-01 87.6% 77.9%
4985272 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 41.0 3.94e-01 87.6% 73.3%
3790399 5.1.5.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ANAPC4_WD40 0.52 46.0 2.89e-01 98.9% 27.1%
5012509 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 40.0 3.64e-01 85.4% 61.7%
5016160 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 40.0 3.80e-01 84.3% 90.0%
5041942 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 40.0 3.72e-01 87.6% 65.2%
5040605 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.70e-01 85.4% 66.4%
4931879 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.51 40.0 3.88e-01 87.6% 75.0%
5016163 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 39.0 3.65e-01 86.5% 65.5%
4975882 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.69e-01 85.4% 66.4%
4982873 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 39.0 3.70e-01 86.5% 69.5%
3386770 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.50 45.0 3.70e-01 100.0% 81.8%
4948170 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.50 41.0 3.82e-01 93.3% 100.0%
4974920 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.50 39.0 3.79e-01 87.6% 75.0%
5035148 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 41.0 3.43e-01 88.8% 61.9%
D3 medium residues 1-118
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20294.5 best KMPT-N 82.1 3.30e-23 55.9% 100.0%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 31.0 3.29e-01 72.0% 56.9%
1u9tA01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 44.0 4.06e-01 85.6% 91.8%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 45.0 4.09e-01 91.5% 84.8%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 30.0 3.15e-01 75.4% 57.3%
1tq5A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 34.0 3.38e-01 83.9% 59.2%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 29.0 2.94e-01 71.2% 49.6%
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.52 32.0 3.13e-01 71.2% 52.9%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.50 34.0 3.10e-01 83.9% 51.3%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 28.0 2.88e-01 73.7% 52.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3505111 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.63 44.0 4.92e-01 72.0% 100.0%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 42.0 3.80e-01 70.3% 86.7%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 40.0 4.47e-01 70.3% 86.7%
1389760 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 29.0 2.94e-01 71.2% 49.6%
3555993 4.1.1.77 beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.53 44.0 4.46e-01 94.1% 90.0%