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NC_061451.1__YP_010303461.1__MPK74_gp320__00320

Bact-Vir

NC_061451.1__YP_010303461.1__MPK74_gp320__00320

Identity

Accession:
NC_061451 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Snuvirus› Erwinia_phage_pEa_SNUABM_7

TaxID: 2866695

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-90
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.72 50.0 4.73e-01 73.4% 100.0%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 54.0 5.00e-01 94.9% 99.0%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.64 44.0 3.69e-01 70.9% 99.2%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.60 49.0 3.51e-01 89.9% 68.1%
4p2qE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.43e-01 72.2% 60.3%
3e3xA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 4.40e-01 96.2% 88.3%
7vxrA01 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.53 39.0 3.65e-01 77.2% 86.7%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.53 40.0 2.82e-01 82.3% 94.5%
1vkzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 36.0 3.05e-01 70.9% 97.8%
7mxdX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.34e-01 77.2% 66.4%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 37.0 3.17e-01 77.2% 93.6%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.51 35.0 3.00e-01 72.2% 73.5%
5c50B00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 44.0 3.43e-01 100.0% 60.0%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.51 44.0 4.04e-01 100.0% 77.3%
1xt5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 2.96e-01 70.9% 58.5%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 2.87e-01 79.7% 37.2%
1kjqB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 37.0 2.82e-01 78.5% 35.6%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 37.0 3.10e-01 78.5% 51.8%
2pvpA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 3.10e-01 81.0% 55.5%
3lp8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 39.0 3.30e-01 100.0% 49.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3874464 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 44.0 2.91e-01 74.7% 20.6%
3929121 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.94e-01 81.0% 53.0%
4180988 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.60 52.0 3.78e-01 100.0% 68.9%
4932631 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.59 45.0 4.16e-01 83.5% 78.6%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.58 40.0 4.42e-01 73.4% 96.6%
4927986 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.56 50.0 3.25e-01 98.7% 30.1%
261 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.56 47.0 3.45e-01 92.4% 96.2%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.56 37.0 3.95e-01 70.9% 81.5%
223776 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.54 41.0 4.26e-01 88.6% 94.4%
4971848 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.53 45.0 3.14e-01 100.0% 35.5%
3409626 4114.1.1.2 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.53 46.0 4.19e-01 100.0% 79.1%
5041794 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.52 44.0 3.07e-01 100.0% 33.6%
4947513 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.52 44.0 3.20e-01 100.0% 40.8%
4966381 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 42.0 2.79e-01 91.1% 93.2%
1697182 859.1.1.4 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13 0.51 44.0 3.44e-01 100.0% 60.9%