Back to structures

NC_062734.1__YP_010355186.1__M1M12_gp017__00017

Bact-Vir

NC_062734.1__YP_010355186.1__M1M12_gp017__00017

Identity

Accession:
NC_062734 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-84
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o4oA00 2.40.128.590 Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain 0.88 83.0 6.08e-01 100.0% 56.3%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 38.0 4.30e-01 72.6% 68.3%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.68 45.0 3.41e-01 77.4% 29.9%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 61.0 4.87e-01 98.8% 54.3%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.66 49.0 5.06e-01 90.5% 82.3%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.66 50.0 4.58e-01 95.2% 61.8%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 58.0 4.78e-01 98.8% 54.9%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.64 50.0 4.18e-01 82.1% 61.4%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 50.0 4.26e-01 83.3% 88.7%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.64 39.0 3.76e-01 75.0% 55.4%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 52.0 4.16e-01 88.1% 69.8%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.62 43.0 3.31e-01 71.4% 48.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.62 44.0 3.99e-01 75.0% 69.0%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 49.0 4.12e-01 85.7% 76.5%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 4.19e-01 88.1% 62.4%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.60 50.0 3.94e-01 90.5% 46.5%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 47.0 3.94e-01 89.3% 49.0%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.43e-01 95.2% 93.9%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 45.0 3.86e-01 83.3% 53.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 50.0 3.88e-01 90.5% 52.6%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 3.93e-01 94.0% 50.3%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 46.0 3.84e-01 89.3% 61.3%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.10e-01 95.2% 89.9%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 45.0 2.94e-01 86.9% 35.5%
5ktaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.52e-01 86.9% 73.0%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.23e-01 95.2% 96.8%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 43.0 3.07e-01 83.3% 86.5%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.82e-01 94.0% 52.3%
1wzvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 47.0 3.92e-01 97.6% 54.7%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 36.0 3.36e-01 70.2% 97.3%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.54 43.0 3.84e-01 90.5% 81.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 39.0 3.39e-01 78.6% 59.9%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 41.0 3.82e-01 83.3% 99.1%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 45.0 3.34e-01 97.6% 89.4%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 43.0 4.04e-01 91.7% 93.4%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.52 42.0 3.30e-01 88.1% 47.3%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.86e-01 96.4% 96.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.16e-01 91.7% 88.1%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.51 44.0 2.87e-01 96.4% 36.9%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.97e-01 91.7% 87.6%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 4.00e-01 94.0% 100.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1952891 9.1.1.9 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.91 80.0 6.59e-01 94.0% 56.6%
4666811 243.3.1.51 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › HalC8_like_N 0.70 56.0 4.61e-01 84.5% 58.6%
4170432 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.69 54.0 4.69e-01 82.1% 60.0%
3993689 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.69 40.0 4.27e-01 76.2% 65.3%
3217505 9.1.1.55 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.69 53.0 4.81e-01 92.9% 60.9%
4258908 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.68 52.0 4.38e-01 81.0% 60.7%
3917456 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.67 48.0 3.05e-01 75.0% 30.4%
3742908 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.66 47.0 4.49e-01 73.8% 78.9%
5043037 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.65 47.0 4.42e-01 81.0% 63.0%
3357113 261.1.1.1 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.65 54.0 4.32e-01 90.5% 52.7%
3247445 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.64 43.0 3.72e-01 84.5% 44.6%
3623154 5.1.4.436 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.64 47.0 2.72e-01 77.4% 10.8%
5062611 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 43.0 3.53e-01 70.2% 82.4%
4244660 5.1.4.564 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29788 0.63 44.0 2.99e-01 72.6% 23.4%
3897308 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.63 54.0 4.32e-01 94.0% 51.8%
4980820 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.63 50.0 3.94e-01 86.9% 41.1%
3851797 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.62 52.0 4.13e-01 89.3% 47.9%
3865129 5.1.4.394 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B 0.62 46.0 2.82e-01 77.4% 33.9%
3284644 243.1.1.71 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF8176 0.62 46.0 4.10e-01 81.0% 89.6%
3781393 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 50.0 5.04e-01 85.7% 92.9%
4261250 213.1.1.2 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.62 47.0 3.60e-01 81.0% 70.5%
3482374 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.01e-01 75.0% 28.4%
3666904 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.60 45.0 3.01e-01 78.6% 31.4%
3677142 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 44.0 2.99e-01 77.4% 32.0%
3264986 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.60 45.0 4.11e-01 78.6% 71.8%
4029617 5.1.11.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.60 44.0 2.75e-01 77.4% 14.1%
4614038 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 50.0 4.23e-01 88.1% 62.4%
4444916 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 2.75e-01 75.0% 19.5%
3796176 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.60 43.0 3.52e-01 75.0% 56.0%
4570280 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.59 41.0 3.88e-01 82.1% 60.0%
3548672 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 48.0 3.97e-01 89.3% 50.3%
3700562 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.59 52.0 4.48e-01 98.8% 61.5%
4026653 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.59 43.0 3.92e-01 76.2% 70.9%
3838102 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.59 48.0 3.02e-01 91.7% 16.3%
4265952 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.59 41.0 3.08e-01 82.1% 30.8%
3560129 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 41.0 3.61e-01 72.6% 52.8%
4100381 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.58 49.0 3.00e-01 91.7% 27.5%
3783938 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.58 41.0 3.82e-01 82.1% 58.7%
3467472 5.1.5.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.58 44.0 3.00e-01 79.8% 31.0%
3998279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 46.0 4.28e-01 88.1% 81.8%
4029739 9.8.1.1 beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.57 50.0 4.47e-01 97.6% 95.0%
3934141 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 48.0 3.76e-01 95.2% 84.2%
3182774 9.4.1.2 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF3471 0.57 48.0 4.32e-01 96.4% 94.2%
3882607 11.1.1.860 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CLSTN_C 0.56 49.0 2.95e-01 96.4% 31.3%
3736600 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.56 43.0 2.88e-01 83.3% 46.1%
5036626 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 49.0 3.10e-01 95.2% 26.6%
3961733 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.56 40.0 3.98e-01 82.1% 70.0%
3937046 9.2.1.5 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 0.55 46.0 4.31e-01 92.9% 88.6%
1492277 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 46.0 3.52e-01 91.7% 71.0%
3187543 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.89e-01 88.1% 81.4%
4002813 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 36.0 3.09e-01 71.4% 79.3%
4679328 389.2.1.0 few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors 0.53 36.0 3.89e-01 88.1% 87.1%
4668044 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 45.0 3.87e-01 95.2% 95.5%
4341156 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.52 35.0 3.48e-01 72.6% 65.6%
3285547 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.51 39.0 3.75e-01 85.7% 95.2%
4330393 243.3.1.23 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3027 0.51 41.0 4.10e-01 88.1% 83.0%
3827143 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 40.0 3.58e-01 89.3% 70.4%
D2 medium residues 85-152
PDB
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.74 67.0 4.12e-01 100.0% 47.6%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.71 61.0 4.07e-01 98.5% 74.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.71 55.0 5.91e-01 83.8% 94.9%
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.70 63.0 4.11e-01 100.0% 86.2%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.70 50.0 5.23e-01 80.9% 85.0%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.69 56.0 4.21e-01 89.7% 43.2%
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 57.0 3.84e-01 89.7% 51.5%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 44.0 4.62e-01 72.1% 72.6%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.68 56.0 4.32e-01 89.7% 51.0%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 51.0 3.96e-01 79.4% 50.0%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.68 59.0 3.91e-01 100.0% 66.2%
7odhL01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.67 49.0 2.94e-01 77.9% 85.8%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.67 44.0 4.12e-01 77.9% 54.8%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.67 59.0 4.06e-01 100.0% 64.9%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.67 54.0 4.58e-01 89.7% 58.4%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 54.0 3.53e-01 91.2% 71.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 44.0 4.19e-01 77.9% 58.0%
1c16A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 49.0 3.74e-01 80.9% 82.2%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 48.0 3.86e-01 100.0% 39.9%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.65 47.0 3.46e-01 77.9% 99.5%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.64 55.0 3.65e-01 95.6% 67.7%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 53.0 3.41e-01 89.7% 36.8%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.64 51.0 3.85e-01 92.6% 34.5%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 51.0 3.44e-01 88.2% 51.1%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.63 54.0 4.34e-01 95.6% 70.1%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.63 48.0 3.81e-01 85.3% 68.6%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 51.0 3.88e-01 94.1% 38.2%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 51.0 4.11e-01 95.6% 46.6%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 3.24e-01 89.7% 31.0%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 50.0 3.77e-01 92.6% 34.1%
1wzlA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 44.0 4.16e-01 75.0% 100.0%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 54.0 3.73e-01 100.0% 81.6%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 52.0 4.04e-01 95.6% 43.9%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 49.0 3.15e-01 86.8% 51.1%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.61 52.0 4.10e-01 100.0% 71.3%
2ze0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 42.0 4.08e-01 73.5% 100.0%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 48.0 3.56e-01 88.2% 83.2%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 41.0 3.94e-01 72.1% 100.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 47.0 3.82e-01 89.7% 84.3%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 50.0 3.53e-01 97.1% 100.0%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 49.0 3.91e-01 98.5% 63.2%
1m53A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 40.0 3.86e-01 72.1% 100.0%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 51.0 3.98e-01 100.0% 49.3%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 48.0 3.94e-01 94.1% 70.5%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.57 48.0 3.80e-01 95.6% 48.7%
3ammA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.57 46.0 3.23e-01 94.1% 93.3%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 38.0 2.64e-01 70.6% 46.1%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 50.0 3.35e-01 100.0% 80.8%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 45.0 3.91e-01 92.6% 63.2%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.56 43.0 2.92e-01 83.8% 33.7%
4aieA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 38.0 3.82e-01 72.1% 100.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 37.0 3.21e-01 70.6% 42.5%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 37.0 3.61e-01 70.6% 100.0%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 3.74e-01 100.0% 51.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 3.85e-01 98.5% 66.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.65e-01 100.0% 54.4%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 45.0 3.82e-01 100.0% 97.7%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 45.0 3.67e-01 95.6% 73.9%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.07e-01 85.3% 40.5%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 36.0 3.12e-01 70.6% 89.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 44.0 3.66e-01 94.1% 65.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 43.0 2.82e-01 95.6% 39.7%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 42.0 3.86e-01 92.6% 70.8%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.68e-01 85.3% 44.6%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 40.0 3.25e-01 92.6% 64.1%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4325844 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.75 65.0 3.92e-01 95.6% 61.1%
3992567 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 54.0 4.41e-01 80.9% 56.8%
4544568 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.71 48.0 4.10e-01 79.4% 43.6%
4969785 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 53.0 3.74e-01 83.8% 25.6%
5038627 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.69 57.0 3.69e-01 91.2% 64.6%
4954483 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.69 48.0 3.91e-01 77.9% 39.2%
3736649 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.69 61.0 4.38e-01 100.0% 61.3%
4008120 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.68 57.0 4.75e-01 94.1% 56.7%
3943894 77.1.1.7 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.68 58.0 4.74e-01 95.6% 53.6%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.67 46.0 4.07e-01 70.6% 63.0%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.67 54.0 5.06e-01 95.6% 70.6%
3739335 4099.1.1.5 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Csm1 0.67 55.0 4.50e-01 94.1% 52.6%
5033173 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.67 52.0 4.52e-01 89.7% 54.1%
1170463 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.66 44.0 4.02e-01 77.9% 51.6%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 47.0 3.25e-01 94.1% 20.8%
5060431 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 56.0 3.47e-01 94.1% 29.5%
4428765 12.3.1.15 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C 0.65 48.0 3.19e-01 80.9% 50.8%
3291499 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 55.0 4.32e-01 97.1% 47.3%
4954308 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.65 46.0 3.24e-01 75.0% 44.7%
5019886 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.65 45.0 4.39e-01 80.9% 66.7%
2320506 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 47.0 3.79e-01 100.0% 38.2%
3520852 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.64 56.0 4.35e-01 98.5% 47.3%
4025950 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 49.0 3.49e-01 83.8% 27.1%
3242315 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.64 45.0 4.87e-01 80.9% 90.9%
3589291 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.64 45.0 3.94e-01 75.0% 100.0%
5023993 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.63 49.0 3.42e-01 82.4% 42.3%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.63 45.0 4.18e-01 76.5% 74.2%
5047148 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.63 52.0 3.31e-01 89.7% 33.0%
3241305 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.63 49.0 3.98e-01 86.8% 84.3%
3326913 12.3.1.2 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.63 53.0 3.68e-01 97.1% 90.8%
4969674 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.16e-01 86.8% 24.4%
3312366 11.1.1.635 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.63 47.0 3.66e-01 79.4% 67.6%
3220053 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.62 50.0 4.17e-01 92.6% 73.8%
4295817 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 52.0 4.20e-01 92.6% 56.9%
4961936 12.3.1.77 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25978 0.62 52.0 3.56e-01 97.1% 58.5%
3469979 12.3.1.43 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › NCU-G1 0.62 52.0 3.38e-01 100.0% 69.0%
3550970 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.61 47.0 4.05e-01 83.8% 100.0%
4024938 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 51.0 3.75e-01 94.1% 57.9%
3219424 5.1.4.585 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29539, PF29566 0.61 47.0 2.80e-01 83.8% 28.6%
4033933 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.61 53.0 4.50e-01 100.0% 67.0%
1954413 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.60 47.0 3.60e-01 86.8% 68.6%
5019887 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 41.0 4.06e-01 70.6% 67.1%
3216472 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.60 49.0 4.12e-01 94.1% 79.2%
3795920 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.60 48.0 4.24e-01 88.2% 80.0%
5043752 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 50.0 3.42e-01 92.6% 38.0%
5064859 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 53.0 3.65e-01 100.0% 93.3%
9393 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.60 52.0 3.55e-01 98.5% 81.3%
5037595 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.60 49.0 3.11e-01 94.1% 32.1%
4943345 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.43e-01 94.1% 66.0%
4390303 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.60 46.0 2.68e-01 83.8% 23.9%
5035253 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 49.0 3.41e-01 98.5% 89.5%
4950432 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.59 51.0 3.72e-01 97.1% 75.3%
3225961 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.59 49.0 4.07e-01 95.6% 79.2%
5049570 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 50.0 3.48e-01 95.6% 82.6%
2391407 12.3.1.35 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GalA_N 0.59 50.0 3.73e-01 98.5% 84.5%
3214409 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 47.0 3.92e-01 92.6% 77.7%
5037959 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.13e-01 92.6% 65.5%
3213551 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 47.0 3.94e-01 92.6% 80.8%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 36.0 3.79e-01 72.1% 70.5%
3610630 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.57 46.0 3.22e-01 89.7% 33.6%
5011595 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.57 49.0 4.02e-01 100.0% 67.7%
3230776 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.57 44.0 2.79e-01 85.3% 33.1%
3524525 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.57 44.0 3.10e-01 85.3% 26.8%
3240153 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 45.0 3.85e-01 94.1% 78.4%
5025094 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 3.92e-01 92.6% 54.8%
5045339 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 43.0 2.86e-01 89.7% 33.7%
3588678 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.55 35.0 3.63e-01 73.5% 67.7%
3394752 5.1.5.41 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.55 41.0 2.62e-01 80.9% 18.1%
2051825 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.55 45.0 2.99e-01 91.2% 75.3%
4012990 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.55 45.0 3.45e-01 97.1% 45.3%
3340789 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 46.0 2.95e-01 98.5% 41.1%
5038973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.88e-01 95.6% 81.0%
3573723 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.52 43.0 2.60e-01 94.1% 69.5%