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NC_062735.1__YP_010355439.1__M1M13_gp050__00050

Bact-Vir

NC_062735.1__YP_010355439.1__M1M13_gp050__00050

Identity

Accession:
NC_062735 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Potamoivirus› Synechococcus_phage_ACG-2014j

TaxID: 1493514

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: rep: MT234341.1__QIW87587.1__Ab1vBOLIVR4_gp70__00070__D8-62
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pb7A01 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.69 47.0 3.45e-01 71.2% 60.5%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 57.0 4.73e-01 100.0% 54.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.63 46.0 4.12e-01 80.3% 81.0%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 43.0 3.24e-01 72.7% 53.2%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 3.25e-01 74.2% 57.6%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 47.0 4.01e-01 86.4% 82.3%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.60 50.0 4.10e-01 92.4% 78.9%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 47.0 3.70e-01 90.9% 40.0%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.60 41.0 3.79e-01 92.4% 55.3%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 46.0 4.25e-01 93.9% 66.3%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 48.0 3.36e-01 95.5% 57.7%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 42.0 3.65e-01 80.3% 78.9%
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 50.0 3.24e-01 100.0% 35.1%
2v4jB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.57 49.0 3.65e-01 100.0% 36.6%
1kqfA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 41.0 2.83e-01 78.8% 92.5%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 48.0 3.32e-01 100.0% 38.1%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.53e-01 72.7% 19.2%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.55 41.0 3.12e-01 81.8% 64.7%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.55 44.0 3.59e-01 87.9% 72.1%
1h0hA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 2.79e-01 78.8% 91.6%
2bcfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 47.0 3.21e-01 100.0% 36.4%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 45.0 4.39e-01 90.9% 82.4%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 46.0 3.25e-01 100.0% 85.8%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 47.0 4.17e-01 100.0% 85.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.27e-01 72.7% 63.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 43.0 3.48e-01 93.9% 74.0%
3v39A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.21e-01 100.0% 77.8%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.54e-01 90.9% 58.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.52 40.0 3.88e-01 90.9% 73.3%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.02e-01 78.8% 91.6%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 42.0 3.80e-01 89.4% 73.9%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 43.0 3.22e-01 100.0% 71.8%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 41.0 3.17e-01 92.4% 72.9%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 44.0 3.54e-01 100.0% 56.2%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 41.0 3.44e-01 92.4% 68.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587376 386.1.1.344 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.70 54.0 5.85e-01 89.4% 98.2%
3227147 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.66 45.0 2.86e-01 71.2% 19.7%
4203743 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.65 45.0 3.52e-01 98.5% 33.1%
5043521 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.64 44.0 3.53e-01 72.7% 66.7%
3971942 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 48.0 3.49e-01 81.8% 46.2%
3705943 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 52.0 4.47e-01 92.4% 56.2%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.63 46.0 4.31e-01 75.8% 85.0%
4045888 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.63 49.0 4.08e-01 86.4% 79.0%
4015179 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 43.0 3.32e-01 71.2% 54.5%
3838844 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.61 43.0 3.84e-01 74.2% 55.3%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 46.0 4.92e-01 89.4% 100.0%
4947839 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 4.13e-01 100.0% 49.6%
3775270 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.61 50.0 4.11e-01 90.9% 79.8%
3838085 7503.1.1.11 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › HP1454-like_C 0.60 51.0 4.43e-01 93.9% 90.0%
5053632 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 4.23e-01 100.0% 57.6%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.25e-01 89.4% 74.7%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 43.0 3.69e-01 89.4% 45.8%
3244569 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 48.0 4.42e-01 92.4% 70.6%
3990088 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.58 49.0 3.71e-01 98.5% 40.6%
4020093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 3.92e-01 95.5% 88.1%
3625905 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 39.0 3.02e-01 71.2% 53.3%
3738542 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.58 46.0 2.87e-01 90.9% 74.0%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 41.0 4.16e-01 75.8% 96.9%
5049059 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 47.0 3.80e-01 100.0% 45.2%
2559760 216.1.1.5 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.57 46.0 3.92e-01 93.9% 59.5%
5072002 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 48.0 3.93e-01 100.0% 60.0%
3618372 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.57 46.0 3.82e-01 90.9% 51.7%
3506512 2.1.1.168 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.57 41.0 3.78e-01 87.9% 57.8%
1147806 868.1.1.7 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › MCEL_TPase 0.56 47.0 3.32e-01 93.9% 95.0%
4952910 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 41.0 3.59e-01 77.3% 81.0%
3616441 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 40.0 3.27e-01 74.2% 67.5%
4170802 1035.1.1.0 ↗ extended segments › Alpha-crystallin B chain N-terminal domain › Alpha-crystallin B chain N-terminal domain › Alpha-crystallin B chain N-terminal domain 0.56 39.0 2.96e-01 74.2% 48.5%
3927497 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.56 44.0 4.21e-01 90.9% 80.0%
3513530 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 39.0 3.18e-01 75.8% 63.1%
4884042 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 4.25e-01 97.0% 79.8%
3714409 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 47.0 3.72e-01 100.0% 50.7%
3827309 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.55 43.0 3.96e-01 93.9% 65.6%
3771028 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 39.0 3.25e-01 74.2% 71.3%
3331262 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.55 43.0 3.91e-01 90.9% 93.7%
3761138 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 39.0 3.28e-01 77.3% 73.9%
4438458 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.54 42.0 2.71e-01 87.9% 80.0%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 36.0 3.62e-01 81.8% 69.2%
3980899 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 43.0 3.72e-01 90.9% 66.4%
4953402 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 44.0 3.00e-01 93.9% 23.8%
3461775 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.58e-01 72.7% 94.7%
3315471 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.53 36.0 3.36e-01 71.2% 80.0%
3697893 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 42.0 2.49e-01 92.4% 51.7%
3505678 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 37.0 2.74e-01 75.8% 90.3%
3578264 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 40.0 3.47e-01 92.4% 51.8%
3789597 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 40.0 3.64e-01 92.4% 60.0%
3479176 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 37.0 3.57e-01 92.4% 66.3%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.51 37.0 3.16e-01 80.3% 86.7%
3505751 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 39.0 3.41e-01 92.4% 54.3%