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NC_062736.1__YP_010355620.1__M1M14_gp008__00008
Bact-VirNC_062736.1__YP_010355620.1__M1M14_gp008__00008
Identity
- Accession:
- NC_062736 ↗
- Kingdom:
- phage
Quality
54.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Chalconvirus›
Synechococcus_phage_ACG-2014e
TaxID: 1493510
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 547-693
Domain cluster:
rep: OR032571.1__WJZ48267.1__X__00077__D150-291
D2
high
residues 706-836
Domain cluster:
rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.80 | 70.0 | 7.32e-01 | 99.2% | 100.0% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.79 | 68.0 | 7.05e-01 | 98.5% | 96.7% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.78 | 68.0 | 6.97e-01 | 100.0% | 96.8% |
| 4hz9A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.77 | 65.0 | 6.84e-01 | 100.0% | 98.3% |
| 2k1gA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.75 | 65.0 | 6.57e-01 | 100.0% | 93.8% |
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.74 | 67.0 | 6.71e-01 | 100.0% | 94.0% |
| 4eq8A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.74 | 68.0 | 6.32e-01 | 97.7% | 87.3% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.73 | 68.0 | 6.51e-01 | 100.0% | 87.8% |
| 3ervA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 54.0 | 4.75e-01 | 95.4% | 94.5% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 48.0 | 4.90e-01 | 84.7% | 96.9% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 31.0 | 4.14e-01 | 86.3% | 100.0% |
| 1ichA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 29.0 | 3.45e-01 | 92.4% | 73.6% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.53 | 40.0 | 3.54e-01 | 80.2% | 76.1% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 35.0 | 4.07e-01 | 85.5% | 97.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4373825 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.80 | 68.0 | 7.01e-01 | 100.0% | 94.4% |
| 5064017 | 219.1.1.166 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Amidase_6 | 0.80 | 74.0 | 7.00e-01 | 99.2% | 98.1% |
| 1489617 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.79 | 68.0 | 6.88e-01 | 98.5% | 91.5% |
| 3971907 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.78 | 71.0 | 7.06e-01 | 100.0% | 93.3% |
| 3291157 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.77 | 73.0 | 7.12e-01 | 100.0% | 95.7% |
| 3979648 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.77 | 69.0 | 6.70e-01 | 100.0% | 87.5% |
| 154189 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.76 | 65.0 | 6.74e-01 | 100.0% | 97.6% |
| 3282002 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.74 | 70.0 | 5.61e-01 | 100.0% | 68.1% |
| 161350 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.74 | 68.0 | 6.50e-01 | 100.0% | 87.2% |
| 1905738 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.71 | 66.0 | 6.30e-01 | 100.0% | 98.0% |
| 5040936 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 53.0 | 5.03e-01 | 95.4% | 98.1% |
| 3968842 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 46.0 | 4.70e-01 | 84.0% | 93.1% |
| 3912838 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.51 | 30.0 | 3.48e-01 | 75.6% | 82.2% |
| 3997796 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.51 | 30.0 | 3.36e-01 | 98.5% | 74.0% |
| 4978160 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.50 | 39.0 | 3.24e-01 | 82.4% | 98.8% |
D3
medium
residues 212-235_366-399