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NC_062736.1__YP_010355701.1__M1M14_gp089__00089

Bact-Vir

NC_062736.1__YP_010355701.1__M1M14_gp089__00089

Identity

Accession:
NC_062736 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-164
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.77 67.0 6.99e-01 96.7% 100.0%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.64 47.0 3.64e-01 76.4% 93.5%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.63 40.0 4.27e-01 100.0% 71.8%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 4.81e-01 98.4% 88.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 48.0 3.78e-01 79.7% 89.2%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 47.0 5.14e-01 99.2% 99.0%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 48.0 3.91e-01 80.5% 90.5%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 4.79e-01 95.9% 95.7%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 46.0 5.10e-01 95.9% 100.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 46.0 3.67e-01 80.5% 89.4%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.59 44.0 3.93e-01 78.9% 96.1%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.59 43.0 2.99e-01 75.6% 100.0%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 48.0 3.91e-01 88.6% 55.6%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 53.0 4.37e-01 100.0% 93.5%
1uisA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 48.0 3.92e-01 89.4% 55.4%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.93e-01 100.0% 95.8%
3kd4A01 2.60.40.3140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.79e-01 100.0% 50.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.56 41.0 4.37e-01 77.2% 99.1%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 52.0 4.87e-01 99.2% 97.9%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.84e-01 98.4% 53.5%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.78e-01 77.2% 95.7%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.81e-01 96.7% 100.0%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.55 50.0 4.62e-01 98.4% 94.2%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 46.0 3.84e-01 89.4% 58.9%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.36e-01 100.0% 92.0%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 50.0 3.88e-01 100.0% 94.8%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 45.0 3.75e-01 88.6% 57.1%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.71e-01 77.2% 67.5%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 3.82e-01 100.0% 67.4%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 47.0 4.44e-01 95.1% 99.3%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 41.0 3.62e-01 80.5% 94.0%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 43.0 2.78e-01 87.0% 87.7%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.54 48.0 4.33e-01 98.4% 100.0%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 40.0 2.70e-01 77.2% 31.9%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 48.0 4.51e-01 98.4% 97.4%
3l9bA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 39.0 3.87e-01 75.6% 76.2%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.60e-01 100.0% 56.2%
2edmA00 2.60.40.2770 Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like 0.53 48.0 4.37e-01 100.0% 93.8%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 42.0 4.15e-01 96.7% 80.2%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 42.0 3.10e-01 87.8% 98.9%
4mxwD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.51e-01 97.6% 100.0%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 46.0 4.47e-01 98.4% 100.0%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 45.0 4.31e-01 95.1% 97.1%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 35.0 3.64e-01 97.6% 75.4%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.51 39.0 4.21e-01 95.9% 99.0%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 4.20e-01 100.0% 93.7%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 40.0 3.59e-01 85.4% 87.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441034 3386.1.1.4 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C 0.76 68.0 6.97e-01 98.4% 97.5%
2581320 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 62.0 6.26e-01 96.7% 95.2%
3952986 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.68 49.0 5.01e-01 74.0% 100.0%
3281166 10.20.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.67 43.0 4.42e-01 100.0% 68.7%
3604637 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.66 46.0 4.74e-01 98.4% 76.5%
3975352 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.63 46.0 4.29e-01 74.8% 100.0%
4937593 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 47.0 3.86e-01 78.0% 93.1%
3838829 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.63 45.0 3.92e-01 74.0% 100.0%
5033737 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.62 48.0 4.09e-01 80.5% 91.5%
5080210 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.61 47.0 3.85e-01 80.5% 89.5%
3249250 4182.1.1.2 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.61 45.0 4.97e-01 100.0% 100.0%
5033844 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.61 46.0 3.71e-01 79.7% 89.2%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 46.0 3.94e-01 100.0% 51.0%
3839285 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.58 44.0 3.84e-01 78.9% 78.4%
1697323 4182.1.1.2 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.57 44.0 4.80e-01 99.2% 100.0%
3973699 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.57 45.0 4.59e-01 100.0% 86.4%
3499342 11.2.1.25 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.57 39.0 4.00e-01 76.4% 73.9%
3526189 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.57 52.0 4.84e-01 98.4% 94.7%
3484264 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 29.0 3.58e-01 74.0% 77.5%
3919708 11.2.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.56 42.0 3.74e-01 78.9% 81.1%
3908007 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.56 52.0 4.83e-01 100.0% 100.0%
3305382 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 42.0 3.98e-01 78.9% 83.4%
3523571 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 41.0 3.99e-01 77.2% 69.6%
3289166 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.55 38.0 3.86e-01 99.2% 70.8%
3621449 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 41.0 3.99e-01 78.9% 95.7%
3890550 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 40.0 3.88e-01 75.6% 92.9%
4248693 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 48.0 4.20e-01 95.9% 94.1%
3259892 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 40.0 3.96e-01 77.2% 99.3%
5022112 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.55 40.0 3.49e-01 75.6% 91.1%
3829251 9.1.1.34 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.55 48.0 4.26e-01 95.1% 90.9%
5052182 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.01e-01 94.3% 68.2%
5010985 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.54 47.0 3.64e-01 97.6% 75.9%
3241035 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 40.0 4.02e-01 78.9% 92.3%
3928171 11.2.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.54 44.0 4.28e-01 100.0% 79.3%
3998366 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 40.0 3.76e-01 78.9% 94.8%
3379907 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 40.0 3.96e-01 78.9% 90.8%
3219787 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 40.0 3.83e-01 78.9% 84.8%
3165307 5084.5.4.1 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.53 41.0 2.85e-01 82.1% 37.1%
3869216 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 39.0 3.78e-01 75.6% 70.4%
3899515 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 40.0 3.84e-01 78.9% 85.7%
3592720 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 40.0 2.95e-01 78.9% 38.8%
4304353 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.53 48.0 4.44e-01 98.4% 98.1%
3529726 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 38.0 3.78e-01 75.6% 73.8%
3484171 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 39.0 3.69e-01 78.9% 86.7%
3782892 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 39.0 3.93e-01 78.9% 95.2%
4339768 11.2.1.25 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.52 39.0 3.94e-01 78.9% 92.8%
4305531 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.52 46.0 4.29e-01 95.1% 94.2%
3489777 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 39.0 3.63e-01 78.9% 84.5%
3242186 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 39.0 4.00e-01 99.2% 81.7%
3715221 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 39.0 3.49e-01 78.9% 70.3%
3180005 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 39.0 3.88e-01 78.9% 96.0%
3898062 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 3.46e-01 78.9% 74.9%
3175675 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 3.79e-01 78.9% 93.8%
4636309 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 45.0 3.76e-01 96.7% 100.0%
3941135 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 3.66e-01 78.9% 86.2%
4048098 10.32.1.243 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29992 0.51 47.0 4.59e-01 99.2% 90.4%
3904175 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 3.57e-01 78.9% 74.8%
901 4252.1.1.1 beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.51 46.0 3.97e-01 100.0% 97.9%
3876968 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.98e-01 100.0% 85.3%
3848617 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 3.53e-01 78.9% 80.0%
3842405 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 36.0 3.35e-01 74.0% 62.5%
3903049 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 37.0 3.74e-01 75.6% 79.2%
3274984 11.1.5.94 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.50 44.0 4.03e-01 96.7% 85.3%
3629773 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 37.0 3.54e-01 78.9% 83.3%