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NC_062743.1__YP_010356450.1__M1M21_gp12__00012
Bact-VirNC_062743.1__YP_010356450.1__M1M21_gp12__00012
Identity
- Accession:
- NC_062743 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Taxonomy
TaxID: 2743803
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-59
Domain cluster:
rep: NC_048842.1__YP_009855357.1__HWC98_gp02__00002__D2-47
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uyiA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.60 | 38.0 | 2.94e-01 | 91.4% | 29.1% |
| 2fqmA01 | 6.10.140.830 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 42.0 | 4.61e-01 | 79.3% | 100.0% |
| 4g6tB00 | 6.10.20.120 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.57 | 39.0 | 3.64e-01 | 70.7% | 73.2% |
| 1z1nX01 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.56 | 44.0 | 3.76e-01 | 87.9% | 71.7% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 40.0 | 2.95e-01 | 82.8% | 88.0% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.55 | 41.0 | 3.29e-01 | 82.8% | 37.9% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 47.0 | 3.46e-01 | 100.0% | 42.1% |
| 2hg7A00 | 3.30.56.60 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like | 0.54 | 39.0 | 3.87e-01 | 96.6% | 73.3% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 41.0 | 2.99e-01 | 91.4% | 89.2% |
| 2j0aA00 | 3.90.550.50 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.52 | 38.0 | 2.61e-01 | 82.8% | 98.4% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.51 | 43.0 | 3.60e-01 | 100.0% | 100.0% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 3.28e-01 | 89.7% | 67.2% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 44.0 | 3.23e-01 | 100.0% | 51.2% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.50 | 26.0 | 3.23e-01 | 70.7% | 82.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3583377 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.60 | 40.0 | 3.91e-01 | 70.7% | 61.5% |
| 3600098 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.59 | 47.0 | 2.93e-01 | 91.4% | 72.9% |
| 5058085 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.59 | 38.0 | 3.67e-01 | 75.9% | 58.5% |
| 3990615 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.58 | 39.0 | 4.02e-01 | 81.0% | 82.0% |
| 3361836 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.57 | 45.0 | 3.29e-01 | 89.7% | 92.6% |
| 3999358 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.57 | 42.0 | 4.21e-01 | 81.0% | 76.7% |
| 381796 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.56 | 40.0 | 3.21e-01 | 79.3% | 71.0% |
| 3343478 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.53 | 42.0 | 3.53e-01 | 86.2% | 85.0% |
| 3583046 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 36.0 | 3.73e-01 | 81.0% | 80.0% |
| 3454770 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.53 | 44.0 | 2.80e-01 | 91.4% | 28.6% |
| 3403619 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.51 | 40.0 | 3.24e-01 | 86.2% | 59.1% |
| 3591799 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.51 | 34.0 | 3.37e-01 | 70.7% | 73.8% |
| 3496461 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.51 | 43.0 | 3.31e-01 | 98.3% | 100.0% |