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NC_062743.1__YP_010356451.1__M1M21_gp13__00013
Bact-VirNC_062743.1__YP_010356451.1__M1M21_gp13__00013
Identity
- Accession:
- NC_062743 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
TaxID: 2743803
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-69
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.77 | 51.0 | 4.38e-01 | 95.5% | 43.7% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.76 | 46.0 | 4.22e-01 | 100.0% | 47.1% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 49.0 | 4.08e-01 | 71.2% | 75.0% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.71 | 50.0 | 4.50e-01 | 75.8% | 53.3% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 57.0 | 5.30e-01 | 87.9% | 90.4% |
| 4udsA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 49.0 | 3.60e-01 | 78.8% | 27.9% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 52.0 | 4.02e-01 | 98.5% | 38.8% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.67 | 46.0 | 4.37e-01 | 71.2% | 61.8% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.65 | 45.0 | 4.06e-01 | 71.2% | 62.5% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 50.0 | 5.18e-01 | 80.3% | 88.5% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 44.0 | 3.54e-01 | 75.8% | 35.9% |
| 3p5nA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.62 | 53.0 | 4.04e-01 | 100.0% | 39.3% |
| 3pr6A00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 54.0 | 4.12e-01 | 95.5% | 59.3% |
| 4cfsA02 | 1.10.210.20 | Mainly Alpha › Orthogonal Bundle › Uteroglobin › | 0.60 | 36.0 | 3.61e-01 | 98.5% | 57.1% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 54.0 | 4.10e-01 | 100.0% | 81.2% |
| 2c5qA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.59 | 53.0 | 3.60e-01 | 98.5% | 98.7% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.58 | 41.0 | 3.76e-01 | 90.9% | 56.3% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.57 | 51.0 | 3.89e-01 | 100.0% | 67.5% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 51.0 | 4.14e-01 | 100.0% | 77.0% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.56 | 48.0 | 3.84e-01 | 100.0% | 97.2% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.55 | 38.0 | 3.99e-01 | 74.2% | 87.3% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.53 | 45.0 | 3.33e-01 | 93.9% | 44.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1174242 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.86 | 63.0 | 6.55e-01 | 77.3% | 83.6% |
| 5015585 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.85 | 63.0 | 5.11e-01 | 77.3% | 67.3% |
| 5057501 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.83 | 61.0 | 5.26e-01 | 77.3% | 80.0% |
| 5023673 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.81 | 73.0 | 5.44e-01 | 100.0% | 42.5% |
| 3781087 | 219.1.1.111 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 | 0.80 | 67.0 | 4.12e-01 | 90.9% | 84.7% |
| 3274209 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.78 | 68.0 | 5.13e-01 | 100.0% | 41.2% |
| 3328315 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.77 | 63.0 | 4.84e-01 | 100.0% | 39.4% |
| 4932779 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.77 | 57.0 | 5.02e-01 | 78.8% | 77.9% |
| 3167091 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.77 | 54.0 | 4.86e-01 | 78.8% | 54.4% |
| 4938196 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.76 | 58.0 | 4.89e-01 | 80.3% | 73.3% |
| 3580289 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 47.0 | 3.78e-01 | 71.2% | 34.4% |
| 4012810 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.74 | 52.0 | 4.82e-01 | 74.2% | 57.6% |
| 2103652 | 109.34.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › 26S proteasome subunit Rpn2 N-terminal domain › 26S proteasome subunit Rpn2 N-terminal domain › RPN2_N | 0.74 | 38.0 | 2.74e-01 | 71.2% | 18.4% |
| 3577210 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.73 | 63.0 | 5.00e-01 | 93.9% | 75.4% |
| 4298932 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.73 | 50.0 | 5.26e-01 | 97.0% | 80.0% |
| 3909952 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.72 | 59.0 | 3.77e-01 | 89.4% | 39.3% |
| 3972061 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.72 | 54.0 | 4.61e-01 | 80.3% | 76.2% |
| 3737750 | 109.4.1.255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_22 | 0.72 | 65.0 | 4.89e-01 | 100.0% | 51.0% |
| 5028225 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.71 | 63.0 | 3.87e-01 | 100.0% | 25.1% |
| 2326441 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.70 | 58.0 | 3.69e-01 | 100.0% | 17.7% |
| 2576218 | 150.1.1.84 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › IMEF_Flp | 0.69 | 55.0 | 4.29e-01 | 86.4% | 51.8% |
| 3344802 | 6158.1.1.0 ↗ | alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region | 0.68 | 47.0 | 4.75e-01 | 71.2% | 72.3% |
| 3598761 | 1106.1.1.0 ↗ | alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 | 0.68 | 40.0 | 3.76e-01 | 86.4% | 49.4% |
| 3795168 | 2007.1.6.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N | 0.67 | 49.0 | 3.40e-01 | 78.8% | 22.6% |
| 4029677 | 3291.1.1.219 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF30356 | 0.67 | 57.0 | 4.43e-01 | 100.0% | 51.6% |
| 1247850 | 191.1.1.38 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_5-like | 0.65 | 45.0 | 3.66e-01 | 75.8% | 37.2% |
| 3286008 | 5050.1.1.52 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CNNM | 0.62 | 55.0 | 4.12e-01 | 100.0% | 66.1% |
| 5039470 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 54.0 | 3.84e-01 | 98.5% | 73.8% |
| 3757869 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.61 | 48.0 | 4.33e-01 | 89.4% | 64.2% |
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 53.0 | 4.61e-01 | 98.5% | 82.0% |
| 3590532 | 1075.1.2.13 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › CNNM | 0.59 | 50.0 | 3.87e-01 | 100.0% | 66.1% |
| 3486215 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.57 | 48.0 | 3.51e-01 | 98.5% | 89.5% |
| 5053903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 3.72e-01 | 86.4% | 86.7% |
| None | — | 0.55 | 39.0 | 3.00e-01 | 77.3% | 95.3% | |
| 4632127 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 46.0 | 4.27e-01 | 95.5% | 91.8% |
| 3227329 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 44.0 | 2.97e-01 | 97.0% | 82.1% |
| 3605193 | 1106.1.1.1 ↗ | alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 › SF3b10 | 0.52 | 43.0 | 4.09e-01 | 90.9% | 76.0% |