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NC_062743.1__YP_010356483.1__M1M21_gp65__00045
Bact-VirNC_062743.1__YP_010356483.1__M1M21_gp65__00045
Identity
- Accession:
- NC_062743 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
TaxID: 2743803
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.67 | 54.0 | 5.28e-01 | 92.5% | 87.9% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 53.0 | 3.78e-01 | 92.5% | 40.8% |
| 3qxyA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.62 | 45.0 | 3.27e-01 | 81.1% | 59.9% |
| 1txjA00 | 2.170.150.10 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | 0.62 | 50.0 | 3.79e-01 | 100.0% | 49.0% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 40.0 | 3.83e-01 | 100.0% | 56.5% |
| 2ge3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 47.0 | 3.48e-01 | 92.5% | 65.2% |
| 4my0A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 51.0 | 3.85e-01 | 100.0% | 47.1% |
| 3blnA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 46.0 | 3.57e-01 | 92.5% | 38.7% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 40.0 | 2.64e-01 | 73.6% | 52.2% |
| 1lrzA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 48.0 | 3.37e-01 | 100.0% | 37.9% |
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.57 | 46.0 | 4.20e-01 | 92.5% | 70.3% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 41.0 | 3.80e-01 | 83.0% | 97.2% |
| 4uhwA09 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.55 | 39.0 | 3.26e-01 | 77.4% | 77.1% |
| 1ffvC03 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 39.0 | 3.20e-01 | 81.1% | 88.6% |
| 1rypD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 40.0 | 2.65e-01 | 83.0% | 50.2% |
| 1sqhA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.46e-01 | 100.0% | 51.1% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.53 | 41.0 | 2.42e-01 | 83.0% | 59.3% |
| 2fe7B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.17e-01 | 94.3% | 40.4% |
| 1tzdA00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.52 | 44.0 | 2.92e-01 | 100.0% | 81.1% |
| 1eejA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 39.0 | 2.97e-01 | 86.8% | 65.5% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.91e-01 | 88.7% | 32.7% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.87e-01 | 84.9% | 54.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4497845 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.69 | 58.0 | 4.11e-01 | 98.1% | 68.0% |
| 4945797 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.65 | 54.0 | 3.90e-01 | 98.1% | 70.3% |
| 3283654 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.64 | 52.0 | 3.67e-01 | 92.5% | 39.4% |
| 5013565 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.63 | 49.0 | 3.69e-01 | 90.6% | 49.3% |
| 3685924 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.62 | 49.0 | 3.46e-01 | 94.3% | 40.0% |
| 3953257 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.62 | 50.0 | 4.05e-01 | 100.0% | 88.3% |
| 3723907 | 213.1.1.77 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_7 | 0.61 | 48.0 | 3.38e-01 | 94.3% | 38.0% |
| 4980230 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.61 | 48.0 | 3.60e-01 | 96.2% | 38.1% |
| 3961640 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.60 | 49.0 | 3.35e-01 | 100.0% | 51.6% |
| 3592832 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 49.0 | 3.66e-01 | 98.1% | 47.1% |
| 4001208 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.60 | 48.0 | 3.48e-01 | 100.0% | 85.9% |
| 5053485 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.59 | 48.0 | 3.50e-01 | 100.0% | 52.3% |
| 3978456 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 43.0 | 3.34e-01 | 92.5% | 43.4% |
| 3739438 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 44.0 | 3.18e-01 | 92.5% | 41.1% |
| 4683371 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.52 | 38.0 | 3.52e-01 | 90.6% | 65.9% |
| 3406489 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.52 | 43.0 | 3.27e-01 | 100.0% | 46.9% |
| 4291289 | 325.1.2.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE › MoaE | 0.52 | 37.0 | 2.69e-01 | 77.4% | 75.5% |
| 3471133 | 708.1.2.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP | 0.51 | 40.0 | 2.98e-01 | 92.5% | 59.5% |
| 3408978 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.51 | 40.0 | 3.13e-01 | 100.0% | 66.0% |
D2
medium
residues 54-120
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.56 | 36.0 | 3.62e-01 | 71.6% | 62.0% |
| 2aegA02 | 3.90.1680.20 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › | 0.54 | 42.0 | 3.42e-01 | 88.1% | 88.7% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 44.0 | 4.06e-01 | 97.0% | 93.6% |
| 4uapA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 3.13e-01 | 88.1% | 82.7% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.52e-01 | 100.0% | 82.7% |
| 1mkfA01 | 2.60.40.1330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 2.81e-01 | 83.6% | 63.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3620456 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.58 | 48.0 | 4.19e-01 | 98.5% | 95.5% |
| 3886506 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 37.0 | 2.56e-01 | 74.6% | 77.0% |
| 5066297 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.52 | 42.0 | 2.86e-01 | 100.0% | 22.9% |
| 169110 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 32.0 | 3.19e-01 | 71.6% | 58.6% |
| 3470932 | 11.2.1.10 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3668 | 0.50 | 34.0 | 2.70e-01 | 73.1% | 91.2% |
| 3482810 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 34.0 | 2.70e-01 | 73.1% | 91.2% |