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NC_062743.1__YP_010356486.1__M1M21_gp62__00048
Bact-VirNC_062743.1__YP_010356486.1__M1M21_gp62__00048
Identity
- Accession:
- NC_062743 ↗
- Kingdom:
- phage
Quality
96.1
mean pLDDT
Taxonomy
TaxID: 2743803
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-74
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n01A00 | 3.30.70.2470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain | 0.68 | 56.0 | 5.31e-01 | 91.8% | 95.4% |
| 2o8mB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 41.0 | 4.32e-01 | 94.5% | 86.4% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 33.0 | 3.89e-01 | 100.0% | 97.7% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.54 | 41.0 | 4.34e-01 | 83.6% | 98.4% |
| 1p5dX04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 43.0 | 4.01e-01 | 91.8% | 91.4% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.52 | 40.0 | 3.91e-01 | 98.6% | 76.5% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.51 | 40.0 | 3.99e-01 | 91.8% | 100.0% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 42.0 | 3.55e-01 | 95.9% | 79.7% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 43.0 | 4.09e-01 | 100.0% | 81.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507376 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.66 | 33.0 | 4.21e-01 | 87.7% | 87.5% |
| 3792780 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.63 | 32.0 | 3.99e-01 | 90.4% | 85.0% |
| 4928950 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.59 | 35.0 | 4.09e-01 | 100.0% | 88.0% |
| 4945988 | 284.4.1.3 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_C | 0.58 | 35.0 | 4.14e-01 | 100.0% | 88.0% |
| 5001614 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 3.83e-01 | 72.6% | 92.9% |
| 3516335 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.57 | 37.0 | 4.28e-01 | 100.0% | 92.5% |
| 5029683 | 4986.1.1.0 ↗ | few secondary structure elements › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain | 0.57 | 38.0 | 4.39e-01 | 95.9% | 100.0% |
| 5002569 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.56 | 32.0 | 3.69e-01 | 100.0% | 82.0% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 34.0 | 3.83e-01 | 98.6% | 88.0% |
| 4959996 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.54 | 33.0 | 3.80e-01 | 100.0% | 90.0% |
| 3975275 | 1.1.13.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 | 0.53 | 42.0 | 3.88e-01 | 87.7% | 75.8% |
| 185291 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.52 | 42.0 | 4.10e-01 | 91.8% | 100.0% |
| 4300564 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.51 | 39.0 | 3.51e-01 | 93.2% | 55.7% |
| 4946890 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.51 | 43.0 | 4.09e-01 | 98.6% | 87.8% |
| 4291120 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.51 | 38.0 | 3.11e-01 | 100.0% | 43.0% |
| 4956395 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.51 | 32.0 | 3.59e-01 | 100.0% | 85.5% |
| 5055408 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.51 | 44.0 | 4.17e-01 | 100.0% | 87.8% |
| 3834374 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.50 | 40.0 | 2.62e-01 | 93.2% | 31.0% |