←Back to structures
NC_062743.1__YP_010356492.1__M1M21_gp56__00054
Bact-VirNC_062743.1__YP_010356492.1__M1M21_gp56__00054
Identity
- Accession:
- NC_062743 ↗
- Kingdom:
- phage
Quality
97.3
mean pLDDT
Taxonomy
TaxID: 2743803
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-69
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bh8A02 | 6.20.370.20 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.63 | 25.0 | 3.43e-01 | 100.0% | 65.6% |
| 3qfhA01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.61 | 32.0 | 3.34e-01 | 88.4% | 53.8% |
| 3ctuA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.59 | 46.0 | 3.67e-01 | 87.0% | 71.7% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.58 | 37.0 | 3.58e-01 | 92.8% | 57.9% |
| 2fgcA03 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.58 | 33.0 | 3.25e-01 | 97.1% | 51.3% |
| 3ddjA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.57 | 47.0 | 3.81e-01 | 91.3% | 81.6% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 36.0 | 3.89e-01 | 94.2% | 77.2% |
| 1yavB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.57 | 44.0 | 3.63e-01 | 87.0% | 78.5% |
| 4jz8B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.56 | 43.0 | 2.87e-01 | 87.0% | 96.5% |
| 2yxlA03 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.54 | 31.0 | 3.37e-01 | 91.3% | 67.2% |
| 3ocoA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 44.0 | 3.60e-01 | 92.8% | 78.7% |
| 6p2uA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.53 | 31.0 | 3.43e-01 | 97.1% | 73.1% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.53 | 43.0 | 3.78e-01 | 91.3% | 59.3% |
| 2e9yB00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 43.0 | 2.84e-01 | 92.8% | 42.9% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 4.19e-01 | 100.0% | 93.7% |
| 3lapA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 4.03e-01 | 100.0% | 89.7% |
| 3i8nB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 41.0 | 3.47e-01 | 92.8% | 84.9% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.50 | 37.0 | 3.70e-01 | 91.3% | 76.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068759 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.56 | 45.0 | 3.60e-01 | 91.3% | 79.3% |
| 3860881 | 11.1.1.365 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like | 0.56 | 36.0 | 3.14e-01 | 88.4% | 40.9% |
| 3711450 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.55 | 40.0 | 3.84e-01 | 100.0% | 67.5% |
| 4994484 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.55 | 43.0 | 3.70e-01 | 91.3% | 84.8% |
| 3172479 | 4012.4.1.0 ↗ | a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain | 0.55 | 32.0 | 3.74e-01 | 92.8% | 88.9% |
| 3237605 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 44.0 | 3.88e-01 | 97.1% | 80.9% |
| 3738415 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.54 | 31.0 | 2.94e-01 | 91.3% | 45.9% |
| 139679 | 101.1.9.21 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N | 0.53 | 43.0 | 3.78e-01 | 91.3% | 59.3% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.53 | 38.0 | 2.96e-01 | 78.3% | 92.4% |
| 3975657 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.53 | 39.0 | 3.89e-01 | 100.0% | 74.7% |
| 4011663 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.52 | 42.0 | 2.99e-01 | 92.8% | 92.5% |
| 3279128 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.52 | 35.0 | 3.57e-01 | 100.0% | 70.0% |
| 4170959 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.51 | 37.0 | 3.89e-01 | 100.0% | 88.3% |
| 4188749 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.51 | 38.0 | 3.73e-01 | 100.0% | 73.8% |
| 3220835 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 41.0 | 3.70e-01 | 100.0% | 87.3% |
| 4679974 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.50 | 39.0 | 3.82e-01 | 100.0% | 80.0% |
| 4059034 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.50 | 43.0 | 4.06e-01 | 100.0% | 80.0% |