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NC_062743.1__YP_010356516.1__M1M21_gp32__00078
Bact-VirNC_062743.1__YP_010356516.1__M1M21_gp32__00078
Identity
- Accession:
- NC_062743 ↗
- Kingdom:
- phage
Quality
78.1
mean pLDDT
Taxonomy
TaxID: 2743803
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-107
Domain cluster:
rep: NC_021803.1__YP_008242121.1__Phi13-2_gp096__00096__D7-104
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mrc100 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.72 | 59.0 | 5.97e-01 | 96.0% | 87.0% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.64 | 33.0 | 3.29e-01 | 81.2% | 46.8% |
| 1p3hB00 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.64 | 53.0 | 5.37e-01 | 95.0% | 89.8% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 33.0 | 3.80e-01 | 87.1% | 73.3% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 31.0 | 3.75e-01 | 70.3% | 79.7% |
| 1vw4I00 | 2.40.150.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 | 0.52 | 38.0 | 3.60e-01 | 100.0% | 62.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4378688 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.74 | 60.0 | 6.19e-01 | 94.1% | 90.5% |
| 3594024 | 236.1.2.0 ↗ | beta barrels › GroES-like › GroES-related › GroES | 0.73 | 57.0 | 6.00e-01 | 96.0% | 91.1% |
| 4082853 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.73 | 58.0 | 6.08e-01 | 94.1% | 90.4% |
| 4182470 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.73 | 59.0 | 6.09e-01 | 94.1% | 90.4% |
| 4341607 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.73 | 59.0 | 6.00e-01 | 94.1% | 87.8% |
| 4173931 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.71 | 58.0 | 6.00e-01 | 96.0% | 91.6% |
| 3508217 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.67 | 60.0 | 5.79e-01 | 95.0% | 90.0% |
| 4029028 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.65 | 54.0 | 5.43e-01 | 96.0% | 88.0% |
| 4417276 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.65 | 55.0 | 5.59e-01 | 93.1% | 91.0% |
| 2794379 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.64 | 49.0 | 5.06e-01 | 96.0% | 85.3% |
| 4028731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 29.0 | 3.42e-01 | 93.1% | 76.9% |
| 5053594 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.54 | 46.0 | 4.18e-01 | 96.0% | 68.3% |
D2
high
residues 111-179
Domain cluster:
rep: MG752970.1__AVH85358.1__RsoM2USA_430__00430__D11-89
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mrc100 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.83 | 76.0 | 6.67e-01 | 100.0% | 85.0% |
| 1p3hB00 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.72 | 66.0 | 5.81e-01 | 100.0% | 87.8% |
| 1jqbA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.64 | 58.0 | 4.08e-01 | 100.0% | 51.6% |
| 1kolA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.63 | 57.0 | 3.91e-01 | 100.0% | 50.7% |
| 1wlyA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.62 | 56.0 | 4.12e-01 | 100.0% | 41.7% |
| 4oh1A01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.62 | 56.0 | 3.90e-01 | 100.0% | 50.9% |
| 4jbgA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.62 | 55.0 | 3.96e-01 | 100.0% | 53.8% |
| 4ej6A01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.62 | 55.0 | 3.94e-01 | 100.0% | 51.0% |
| 2dfvA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.62 | 55.0 | 3.89e-01 | 100.0% | 51.2% |
| 3twoB01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.61 | 54.0 | 3.91e-01 | 100.0% | 59.5% |
| 3uogA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.61 | 54.0 | 3.89e-01 | 100.0% | 52.8% |
| 3gazA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.60 | 54.0 | 4.08e-01 | 100.0% | 52.1% |
| 3meqA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.60 | 53.0 | 3.81e-01 | 100.0% | 53.7% |
| 1qorA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.60 | 54.0 | 3.97e-01 | 100.0% | 43.9% |
| 1e3jA02 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.60 | 54.0 | 3.83e-01 | 100.0% | 53.2% |
| 3fbgA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.59 | 53.0 | 3.85e-01 | 100.0% | 41.8% |
| 2b5vA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.59 | 54.0 | 3.72e-01 | 100.0% | 50.5% |
| 3tqhA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.59 | 54.0 | 3.89e-01 | 100.0% | 49.5% |
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 41.0 | 4.36e-01 | 98.6% | 82.0% |
| 4ku0D00 | 2.60.200.60 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 37.0 | 3.43e-01 | 73.9% | 79.2% |
| 1hh2P02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 4.36e-01 | 100.0% | 90.5% |
| 1vx7M00 | 2.40.150.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 | 0.53 | 46.0 | 3.79e-01 | 100.0% | 61.4% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 38.0 | 3.31e-01 | 82.6% | 64.7% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 38.0 | 3.15e-01 | 85.5% | 77.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4378688 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.86 | 80.0 | 7.08e-01 | 100.0% | 89.5% |
| 4341607 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.85 | 79.0 | 6.91e-01 | 100.0% | 86.7% |
| 4082853 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.84 | 78.0 | 6.96e-01 | 100.0% | 89.4% |
| 4173931 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.83 | 77.0 | 6.84e-01 | 100.0% | 89.5% |
| 3594024 | 236.1.2.0 ↗ | beta barrels › GroES-like › GroES-related › GroES | 0.83 | 76.0 | 6.92e-01 | 100.0% | 88.9% |
| 3938500 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.82 | 74.0 | 6.76e-01 | 98.6% | 93.3% |
| 4182470 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.82 | 76.0 | 6.74e-01 | 100.0% | 89.4% |
| 4417276 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.80 | 73.0 | 6.40e-01 | 100.0% | 91.0% |
| 3359945 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.80 | 73.0 | 6.45e-01 | 100.0% | 81.4% |
| 4029028 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.79 | 72.0 | 6.32e-01 | 100.0% | 86.0% |
| 2794379 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.74 | 66.0 | 5.93e-01 | 100.0% | 84.2% |
| 3674955 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.72 | 64.0 | 6.05e-01 | 100.0% | 82.5% |
| 3286331 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.63 | 57.0 | 5.37e-01 | 97.1% | 100.0% |
| 4941767 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.63 | 57.0 | 4.07e-01 | 100.0% | 52.8% |
| 4055501 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.62 | 55.0 | 3.89e-01 | 100.0% | 49.3% |
| 3722003 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.61 | 56.0 | 3.89e-01 | 100.0% | 52.1% |
| 3828161 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.61 | 55.0 | 4.16e-01 | 100.0% | 49.4% |
| 3930643 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 34.0 | 3.59e-01 | 76.8% | 60.0% |
| 3096364 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.60 | 54.0 | 4.51e-01 | 100.0% | 68.9% |
| 3735627 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.60 | 53.0 | 3.65e-01 | 100.0% | 40.8% |
| None | — | 0.59 | 54.0 | 3.97e-01 | 100.0% | 64.4% | |
| 160166 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.59 | 54.0 | 4.26e-01 | 100.0% | 82.4% |
| 4333261 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.59 | 53.0 | 3.75e-01 | 100.0% | 50.0% |
| 2784372 | 4.1.1.8 ↗ | beta barrels › SH3 › SH3 › SH3 › IN_DBD_C | 0.58 | 34.0 | 3.56e-01 | 79.7% | 61.9% |
| 3732283 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.56 | 43.0 | 3.70e-01 | 85.5% | 85.0% |
| 4335022 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 35.0 | 3.22e-01 | 81.2% | 50.5% |
| 3251345 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 34.0 | 2.79e-01 | 98.6% | 32.9% |