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NC_062744.1__YP_010356542.1__M1M22_gp014__00014

Bact-Vir

NC_062744.1__YP_010356542.1__M1M22_gp014__00014

Identity

Accession:
NC_062744 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pervagoviridae› Callevirus› Cellulophaga_phage_Calle_1

TaxID: 2745643

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-75
PDB
Domain cluster: rep: NC_062743.1__YP_010356515.1__M1M21_gp33__00077__D4-70
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.73 41.0 5.05e-01 91.5% 90.7%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 42.0 3.93e-01 94.4% 51.1%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 44.0 3.56e-01 94.4% 37.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 39.0 3.68e-01 97.2% 51.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 47.0 4.02e-01 88.7% 70.8%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 3.67e-01 100.0% 67.3%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 38.0 3.28e-01 100.0% 43.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.51e-01 100.0% 82.7%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 37.0 3.67e-01 88.7% 62.0%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.69e-01 90.1% 56.8%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.55 41.0 3.45e-01 81.7% 72.8%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 3.44e-01 80.3% 62.2%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.97e-01 91.5% 95.1%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 3.72e-01 91.5% 75.0%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.08e-01 88.7% 62.2%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 4.06e-01 88.7% 89.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 34.0 3.61e-01 80.3% 75.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.89e-01 74.6% 87.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 4.06e-01 87.3% 88.7%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 47.0 3.08e-01 100.0% 87.0%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.52e-01 93.0% 91.4%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.52 40.0 2.93e-01 100.0% 28.6%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 34.0 3.96e-01 100.0% 98.0%
4nzdB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.77e-01 88.7% 94.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.70e-01 87.3% 78.8%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.52 42.0 3.25e-01 94.4% 95.0%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.65e-01 88.7% 85.6%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.60e-01 94.4% 85.2%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.62e-01 91.5% 62.2%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 43.0 2.66e-01 95.8% 16.1%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.73e-01 93.0% 22.1%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 41.0 2.51e-01 90.1% 24.6%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 40.0 2.44e-01 87.3% 18.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.50 35.0 3.80e-01 74.6% 100.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4397221 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.67 46.0 4.86e-01 87.3% 78.5%
4927100 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.65 42.0 3.91e-01 94.4% 51.1%
3936843 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 49.0 3.21e-01 84.5% 21.3%
4994192 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.61 35.0 3.44e-01 90.1% 50.0%
3925321 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 46.0 3.05e-01 83.1% 21.0%
3394215 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 42.0 3.75e-01 71.8% 60.0%
4533527 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.60 40.0 3.25e-01 70.4% 57.2%
4568161 283.2.1.18 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Lipoprotein_17 0.60 44.0 4.22e-01 88.7% 68.8%
4998457 2003.1.2.40 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored 0.58 48.0 3.09e-01 91.5% 43.9%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.56e-01 81.7% 87.7%
3831169 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.57 45.0 3.02e-01 84.5% 87.6%
1557493 4056.1.1.6 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel 0.57 50.0 4.86e-01 98.6% 98.8%
4940436 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.57 41.0 3.82e-01 93.0% 60.0%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 42.0 4.40e-01 85.9% 87.7%
None — 0.56 47.0 4.17e-01 94.4% 78.1%
3934044 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.56 48.0 3.05e-01 94.4% 23.1%
3221233 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 4.13e-01 85.9% 100.0%
3805898 220.1.1.80 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N 0.56 46.0 4.17e-01 94.4% 96.0%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.91e-01 98.6% 100.0%
3185712 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.48e-01 81.7% 94.4%
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 46.0 3.91e-01 94.4% 75.0%
3623154 5.1.4.436 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.55 45.0 2.58e-01 100.0% 8.0%
3879095 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 42.0 3.64e-01 85.9% 82.7%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.53 43.0 3.91e-01 94.4% 74.3%
3303863 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 45.0 2.89e-01 94.4% 33.0%
3829068 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 43.0 3.09e-01 94.4% 36.5%
4041551 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.52 41.0 3.59e-01 91.5% 95.0%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.52 44.0 4.30e-01 100.0% 86.3%
4470389 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 41.0 3.21e-01 91.5% 50.0%
3736971 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.51 44.0 2.82e-01 100.0% 30.9%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.51 38.0 3.96e-01 85.9% 87.7%
3197280 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.58e-01 85.9% 92.6%
3930206 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.49e-01 81.7% 86.0%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.51 38.0 3.93e-01 85.9% 87.7%
4891006 5.1.5.230 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CFAP43_N 0.51 46.0 2.97e-01 100.0% 31.2%
3705749 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.63e-01 100.0% 43.7%
4149684 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 37.0 2.55e-01 93.0% 20.7%
3513302 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.51 37.0 3.31e-01 78.9% 84.8%
3272161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.34e-01 98.6% 61.2%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 40.0 3.97e-01 100.0% 84.0%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 42.0 4.41e-01 98.6% 100.0%
3617341 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.50 43.0 2.68e-01 94.4% 18.4%