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NC_062744.1__YP_010356543.1__M1M22_gp015__00015

Bact-Vir

NC_062744.1__YP_010356543.1__M1M22_gp015__00015

Identity

Accession:
NC_062744 ↗
Kingdom:
phage

Quality

59.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pervagoviridae› Callevirus› Cellulophaga_phage_Calle_1

TaxID: 2745643

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 317-441
PDB
Domain cluster: rep: PH2015_22_scaffold_0_prodigal-single.1__X__X__00160__D748-882
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.72 54.0 5.88e-01 100.0% 95.2%
2ze0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 41.0 5.03e-01 99.2% 98.7%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.64 58.0 5.19e-01 100.0% 97.2%
1kacA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.62 57.0 4.98e-01 100.0% 96.2%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.62 56.0 4.87e-01 100.0% 97.4%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.61 56.0 4.92e-01 100.0% 97.8%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.61 55.0 4.99e-01 100.0% 97.7%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.60 49.0 4.58e-01 85.6% 93.3%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.60 50.0 4.61e-01 87.2% 91.6%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 52.0 3.98e-01 100.0% 94.7%
1ulvA04 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.76e-01 87.2% 64.8%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 40.0 4.09e-01 86.4% 73.4%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 47.0 4.41e-01 87.2% 91.2%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.56 43.0 4.22e-01 79.2% 77.4%
2bzvA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.55 51.0 4.82e-01 100.0% 97.9%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.54 42.0 4.20e-01 85.6% 77.9%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 4.12e-01 97.6% 77.1%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.66e-01 100.0% 97.6%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 47.0 3.55e-01 100.0% 92.2%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 46.0 3.61e-01 100.0% 91.7%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 34.0 3.89e-01 72.8% 92.1%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 46.0 3.55e-01 100.0% 95.3%
4kx7A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.88e-01 98.4% 95.2%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 4.00e-01 88.0% 89.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2491361 5092.1.1.0 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.83 79.0 7.78e-01 100.0% 98.5%
3164980 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.79 73.0 7.29e-01 99.2% 99.2%
3290942 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 42.0 4.52e-01 100.0% 76.2%
3739999 11.1.1.646 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.62 45.0 4.20e-01 100.0% 62.0%
4014092 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 4.31e-01 99.2% 67.9%
3567304 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.59 37.0 4.30e-01 97.6% 90.6%
4099548 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.58 47.0 4.47e-01 87.2% 94.0%
3798295 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 47.0 4.13e-01 88.0% 79.5%
3193395 11.1.1.646 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.56 41.0 3.93e-01 100.0% 65.5%
3838130 5084.5.1.25 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 0.55 44.0 2.93e-01 100.0% 22.7%
5062224 11.1.1.131 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EB_dh 0.53 44.0 3.79e-01 93.6% 87.9%
3740918 11.1.1.646 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.53 40.0 3.86e-01 99.2% 70.7%
3490071 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.51 42.0 3.43e-01 88.0% 91.5%
4034405 5084.5.2.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.51 38.0 2.67e-01 80.0% 77.8%
5028178 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.51 31.0 2.63e-01 100.0% 36.6%
D2 medium residues 21-78
PDB
Domain cluster: rep: pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00056__D12-69
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pyiA01 4.10.240.10 Few Secondary Structures › Irregular › CD2-Gal4 › Zn(2)-C6 fungal-type DNA-binding domain 0.54 33.0 3.25e-01 100.0% 54.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040491 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 33.0 3.15e-01 72.4% 51.4%
D3 medium residues 170-242
PDB