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NC_062744.1__YP_010356561.1__M1M22_gp082__00033

Bact-Vir

Identity

Accession:: NC_062744 ↗
Kingdom:: phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pervagoviridae› Callevirus› Cellulophaga_phage_Calle_1

TaxID: 2745643

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-99

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2e9fB01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.61	47.0	4.60e-01	86.0%	75.0%
3b8mC02	1.10.287.210	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	28.0	2.62e-01	100.0%	31.7%
1tuzA00	1.10.238.110	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha.	0.59	42.0	3.79e-01	88.4%	53.4%
2wzfA03	1.20.120.990	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Glycosyltransferase family 88, C-terminal domain	0.58	41.0	3.75e-01	98.8%	52.4%
2k19A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.58	43.0	4.16e-01	94.2%	69.4%
5bn3A04	1.10.1140.10	Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3	0.58	43.0	3.71e-01	79.1%	65.5%
2bpoA02	1.20.990.10	Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3	0.58	47.0	3.93e-01	89.5%	51.7%
4fp4A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	48.0	3.53e-01	93.0%	33.7%
4c0kA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.55	40.0	3.86e-01	93.0%	65.3%
2jifA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.54	37.0	3.11e-01	72.1%	66.2%
1p2xA00	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.53	38.0	3.08e-01	74.4%	58.5%
2bi7A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.53	42.0	3.25e-01	87.2%	96.5%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	40.0	3.60e-01	81.4%	76.3%
2bs2A01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.52	41.0	2.87e-01	90.7%	82.4%
3nlcA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	41.0	3.12e-01	94.2%	74.9%
3e3rA02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.51	36.0	3.49e-01	75.6%	96.0%
3pt1A02	1.20.930.60	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A ›	0.50	42.0	3.83e-01	96.5%	95.8%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3825848	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.63	42.0	3.38e-01	95.3%	35.2%
4460231	7579.1.1.5 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10	0.59	44.0	2.80e-01	79.1%	44.0%
3430559	611.7.1.0 ↗	alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain	0.58	45.0	3.89e-01	83.7%	94.1%
3867542	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.57	42.0	4.27e-01	81.4%	78.8%
3724093	7579.1.1.5 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10	0.55	42.0	2.76e-01	87.2%	82.2%
3486843	5069.1.1.38 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Frag1	0.54	39.0	2.93e-01	77.9%	82.2%
3453492	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.53	42.0	3.70e-01	84.9%	74.4%
3666811	145.1.1.3 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like	0.53	42.0	3.77e-01	88.4%	61.7%
3548677	140.1.1.11 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1	0.52	45.0	3.41e-01	98.8%	40.9%
3640243	605.4.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein	0.52	39.0	4.12e-01	82.6%	90.7%
5010095	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.52	39.0	3.35e-01	80.2%	65.2%
3216428	5001.1.1.28 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Per1	0.51	42.0	3.04e-01	96.5%	73.0%
1833627	3838.1.1.0 ↗	alpha arrays › SidM Rab1-activation domain › SidM Rab1-activation domain › SidM Rab1-activation domain	0.51	42.0	2.86e-01	90.7%	25.0%
4011862	7516.1.1.82 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_2	0.51	43.0	2.75e-01	100.0%	56.5%
3584235	5001.1.1.3 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2	0.51	44.0	3.71e-01	98.8%	80.5%