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NC_062744.1__YP_010356569.1__M1M22_gp074__00041
Bact-VirNC_062744.1__YP_010356569.1__M1M22_gp074__00041
Identity
- Accession:
- NC_062744 ↗
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Taxonomy
TaxID: 2745643
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-99
Domain cluster:
rep: NC_062744.1__YP_010356569.1__M1M22_gp074__00041__D110-199
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 39.0 | 3.67e-01 | 93.5% | 50.9% |
| 3qowA01 | 1.10.260.60 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.59 | 50.0 | 4.55e-01 | 100.0% | 69.7% |
| 1obbA00 | 3.90.1820.10 | Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase | 0.57 | 49.0 | 3.11e-01 | 94.6% | 63.2% |
| 2p0hA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 34.0 | 3.17e-01 | 88.0% | 45.8% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.55 | 25.0 | 3.29e-01 | 91.3% | 90.0% |
| 3n75A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 46.0 | 3.86e-01 | 96.7% | 75.9% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.53 | 41.0 | 3.30e-01 | 81.5% | 84.6% |
| 4qmfD02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 36.0 | 3.69e-01 | 72.8% | 84.8% |
| 1tuaA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 39.0 | 3.80e-01 | 81.5% | 70.5% |
| 6g4bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 43.0 | 3.66e-01 | 97.8% | 56.7% |
| 5d3xB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 34.0 | 2.99e-01 | 100.0% | 44.0% |
| 2xriA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 41.0 | 3.24e-01 | 88.0% | 92.7% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 44.0 | 3.17e-01 | 100.0% | 93.6% |
| 3nuiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 42.0 | 3.76e-01 | 96.7% | 66.4% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 34.0 | 3.50e-01 | 91.3% | 71.9% |
| 2z0qA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.25e-01 | 98.9% | 53.1% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.50 | 36.0 | 4.00e-01 | 94.6% | 97.1% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 32.0 | 3.12e-01 | 98.9% | 55.6% |
| 1w07A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 39.0 | 3.23e-01 | 84.8% | 67.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940847 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.65 | 38.0 | 3.62e-01 | 93.5% | 48.2% |
| 4441866 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.64 | 39.0 | 4.53e-01 | 70.7% | 86.2% |
| 4004179 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.61 | 37.0 | 2.78e-01 | 93.5% | 23.9% |
| 3652949 | 5.1.5.85 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 | 0.61 | 37.0 | 2.61e-01 | 90.2% | 18.7% |
| 3493400 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.59 | 40.0 | 3.82e-01 | 94.6% | 60.0% |
| 4940313 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 50.0 | 4.53e-01 | 97.8% | 89.8% |
| 4467547 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 40.0 | 4.45e-01 | 91.3% | 100.0% |
| 4250586 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 48.0 | 4.53e-01 | 93.5% | 93.9% |
| 3475699 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.58 | 37.0 | 3.59e-01 | 93.5% | 57.1% |
| 5070513 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.58 | 45.0 | 4.78e-01 | 83.7% | 100.0% |
| 3237001 | 5001.1.1.33 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh | 0.57 | 50.0 | 3.51e-01 | 100.0% | 87.7% |
| 3967597 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.57 | 41.0 | 4.23e-01 | 97.8% | 81.2% |
| 4563340 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 41.0 | 4.44e-01 | 92.4% | 100.0% |
| 3404845 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 36.0 | 3.57e-01 | 92.4% | 62.1% |
| 3563905 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.55 | 49.0 | 3.45e-01 | 100.0% | 89.2% |
| 5060972 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.55 | 38.0 | 3.74e-01 | 71.7% | 76.0% |
| 3783302 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.55 | 38.0 | 2.93e-01 | 72.8% | 97.3% |
| 4013297 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 42.0 | 3.38e-01 | 82.6% | 73.5% |
| 3312934 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.54 | 37.0 | 3.60e-01 | 72.8% | 70.0% |
| 3565424 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.54 | 39.0 | 3.50e-01 | 93.5% | 55.2% |
| 4978941 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.54 | 41.0 | 3.97e-01 | 81.5% | 73.0% |
| 3981156 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 40.0 | 3.96e-01 | 80.4% | 73.0% |
| 3228248 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 3.35e-01 | 98.9% | 69.5% |
| 4943412 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 37.0 | 3.70e-01 | 72.8% | 77.0% |
| 5054777 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.54 | 37.0 | 3.77e-01 | 73.9% | 81.9% |
| 4932602 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.54 | 37.0 | 3.75e-01 | 73.9% | 78.9% |
| 5035791 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.53 | 37.0 | 3.73e-01 | 73.9% | 78.7% |
| 4941462 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.53 | 37.0 | 3.65e-01 | 72.8% | 76.0% |
| 4668989 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 37.0 | 3.72e-01 | 73.9% | 85.3% |
| 4335178 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 43.0 | 4.16e-01 | 93.5% | 85.5% |
| 3487656 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 33.0 | 3.33e-01 | 93.5% | 61.1% |
| 3276622 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 36.0 | 3.85e-01 | 70.7% | 100.0% |
| 3502500 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.52 | 46.0 | 3.78e-01 | 100.0% | 60.0% |
| 3464744 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.51 | 36.0 | 3.10e-01 | 93.5% | 44.5% |
| 4483820 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.51 | 40.0 | 3.38e-01 | 93.5% | 51.3% |
| 3562988 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.51 | 38.0 | 3.35e-01 | 94.6% | 54.1% |
D2
high
residues 110-199
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bnmA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 39.0 | 4.18e-01 | 73.3% | 79.7% |
| 2eqoA01 | 1.10.418.50 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Microtubule-binding protein MIP-T3 | 0.59 | 51.0 | 4.57e-01 | 97.8% | 87.0% |
| 1tuaA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 41.0 | 3.94e-01 | 75.6% | 72.4% |
| 4e2oA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 37.0 | 2.49e-01 | 71.1% | 89.1% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.54 | 43.0 | 3.16e-01 | 88.9% | 91.0% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 40.0 | 3.09e-01 | 82.2% | 45.7% |
| 1h8mA00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.51 | 42.0 | 3.70e-01 | 93.3% | 100.0% |
| 4qmfD02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 37.0 | 3.74e-01 | 78.9% | 81.5% |
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.51 | 35.0 | 3.82e-01 | 94.4% | 94.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967597 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.61 | 43.0 | 4.49e-01 | 100.0% | 80.0% |
| 5014476 | 241.1.1.28 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF4268 | 0.60 | 51.0 | 4.44e-01 | 96.7% | 80.7% |
| 4033471 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.59 | 42.0 | 4.15e-01 | 80.0% | 70.5% |
| 3403940 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.59 | 38.0 | 4.05e-01 | 82.2% | 73.8% |
| 4467547 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 40.0 | 4.44e-01 | 92.2% | 100.0% |
| 5060972 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.57 | 41.0 | 4.00e-01 | 75.6% | 77.0% |
| 3408332 | 633.23.1.3 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl | 0.57 | 44.0 | 3.39e-01 | 83.3% | 66.8% |
| 5005193 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.56 | 43.0 | 2.65e-01 | 82.2% | 15.0% |
| 4026701 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.54 | 41.0 | 3.23e-01 | 82.2% | 49.5% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.54 | 41.0 | 3.70e-01 | 83.3% | 77.7% |
| 3285236 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 35.0 | 3.90e-01 | 77.8% | 100.0% |
| 3528742 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 43.0 | 3.32e-01 | 90.0% | 90.2% |
| 3233751 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 44.0 | 3.38e-01 | 94.4% | 59.1% |
| 4816887 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.53 | 30.0 | 2.65e-01 | 96.7% | 37.5% |
| 54740 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.52 | 39.0 | 4.20e-01 | 93.3% | 100.0% |
| 282935 | 3601.1.1.1 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg | 0.52 | 39.0 | 3.14e-01 | 82.2% | 69.4% |
| 4012893 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 42.0 | 3.20e-01 | 94.4% | 48.3% |
| 4102293 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.51 | 43.0 | 3.46e-01 | 96.7% | 96.3% |
| 3923738 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.50 | 43.0 | 3.17e-01 | 96.7% | 63.5% |
| 3723906 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 39.0 | 2.94e-01 | 84.4% | 67.2% |
| 3236856 | 174.1.1.50 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807 | 0.50 | 43.0 | 3.49e-01 | 100.0% | 49.1% |