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NC_062744.1__YP_010356576.1__M1M22_gp067__00048
Bact-VirNC_062744.1__YP_010356576.1__M1M22_gp067__00048
Identity
- Accession:
- NC_062744 ↗
- Kingdom:
- phage
Quality
48.1
mean pLDDT
Taxonomy
TaxID: 2745643
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 153-205
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.73 | 57.0 | 5.60e-01 | 84.9% | 91.2% |
| 2cufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 53.0 | 4.85e-01 | 84.9% | 87.5% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.69 | 36.0 | 3.31e-01 | 92.5% | 36.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.68 | 49.0 | 4.34e-01 | 79.2% | 76.8% |
| 2zyzB01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.67 | 48.0 | 4.06e-01 | 75.5% | 95.5% |
| 3adrB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.65 | 48.0 | 3.14e-01 | 83.0% | 81.2% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 36.0 | 2.78e-01 | 73.6% | 26.5% |
| 2e5aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 48.0 | 3.17e-01 | 94.3% | 40.7% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.57 | 49.0 | 2.97e-01 | 100.0% | 53.8% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.11e-01 | 100.0% | 65.3% |
| 2napA03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.56 | 47.0 | 3.16e-01 | 100.0% | 55.9% |
| 2wtmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 47.0 | 3.07e-01 | 100.0% | 29.2% |
| 7pbkB02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 45.0 | 3.48e-01 | 96.2% | 44.4% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 3.08e-01 | 96.2% | 32.3% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 43.0 | 3.37e-01 | 98.1% | 59.6% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 3.88e-01 | 88.7% | 64.4% |
| 7zj3D01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 41.0 | 3.70e-01 | 90.6% | 60.5% |
| 1eg7A02 | 3.30.1510.10 | Alpha Beta › 2-Layer Sandwich › Domain 2, N(10)-formyltetrahydrofolate synthetase › Domain 2, N(10)-formyltetrahydrofolate synthetase | 0.52 | 38.0 | 3.11e-01 | 84.9% | 68.9% |
| 3hwcA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.52 | 41.0 | 3.01e-01 | 96.2% | 31.3% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 40.0 | 2.66e-01 | 86.8% | 41.2% |
| 2kkcA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 39.0 | 3.39e-01 | 92.5% | 86.0% |
| 5iz3A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.50 | 40.0 | 2.95e-01 | 98.1% | 94.8% |
| 7z8iC01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.50 | 40.0 | 3.65e-01 | 98.1% | 97.5% |
| 1hdiA01 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.50 | 43.0 | 2.98e-01 | 96.2% | 53.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3271981 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 52.0 | 3.71e-01 | 77.4% | 32.9% |
| 3630881 | 2002.1.1.43 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth | 0.70 | 51.0 | 3.10e-01 | 77.4% | 16.4% |
| 3250585 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.70 | 51.0 | 2.95e-01 | 79.2% | 8.8% |
| 3733265 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.69 | 59.0 | 4.82e-01 | 100.0% | 63.8% |
| 4939346 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.69 | 49.0 | 3.96e-01 | 75.5% | 74.0% |
| 4014194 | 4075.1.1.0 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain | 0.69 | 58.0 | 4.83e-01 | 100.0% | 67.0% |
| 3228340 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.67 | 56.0 | 4.67e-01 | 98.1% | 64.0% |
| 3250268 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 48.0 | 3.19e-01 | 77.4% | 21.4% |
| 5044026 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.66 | 46.0 | 3.95e-01 | 73.6% | 95.3% |
| 3255589 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 54.0 | 3.38e-01 | 92.5% | 31.0% |
| 3199288 | 109.26.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › HEAT_Nup120 | 0.65 | 55.0 | 3.24e-01 | 92.5% | 27.2% |
| 3272872 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 52.0 | 3.14e-01 | 92.5% | 12.7% |
| 3250586 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 52.0 | 3.68e-01 | 90.6% | 28.5% |
| 5069674 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.65 | 46.0 | 4.19e-01 | 77.4% | 96.0% |
| 3250267 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.65 | 47.0 | 3.14e-01 | 79.2% | 20.9% |
| 136506 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.65 | 52.0 | 4.46e-01 | 98.1% | 66.7% |
| 3271233 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.63 | 47.0 | 2.84e-01 | 92.5% | 11.7% |
| 3170650 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.62 | 53.0 | 3.16e-01 | 100.0% | 21.7% |
| 3175614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 53.0 | 3.17e-01 | 100.0% | 23.5% |
| 3250588 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.58 | 45.0 | 3.83e-01 | 88.7% | 51.6% |
| 3275293 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 43.0 | 2.80e-01 | 94.3% | 17.0% |
| 3661809 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.56 | 36.0 | 3.49e-01 | 73.6% | 55.4% |
| 3622107 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.56 | 36.0 | 3.43e-01 | 86.8% | 51.4% |
| 4565350 | 304.111.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C | 0.55 | 45.0 | 3.23e-01 | 96.2% | 82.9% |
| 1687145 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 49.0 | 4.00e-01 | 100.0% | 77.6% |
| 3692977 | 109.21.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 | 0.55 | 41.0 | 2.48e-01 | 88.7% | 91.1% |
| 4944605 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.55 | 43.0 | 2.91e-01 | 88.7% | 30.2% |
| 3614292 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.54 | 39.0 | 2.75e-01 | 98.1% | 24.1% |
| 3227199 | 242.2.1.6 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_end_N2 | 0.54 | 44.0 | 3.97e-01 | 98.1% | 86.3% |
| 4943989 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 44.0 | 3.26e-01 | 96.2% | 39.4% |
| 4675076 | 192.19.1.1 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like › DUF896 | 0.53 | 36.0 | 3.26e-01 | 71.7% | 54.7% |
| 3449773 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.53 | 42.0 | 2.67e-01 | 90.6% | 58.2% |
| 4933113 | 101.1.9.150 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Cas12f1-like_TNB | 0.53 | 36.0 | 3.00e-01 | 90.6% | 35.5% |
| 3578095 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.53 | 39.0 | 2.99e-01 | 79.2% | 82.5% |
| 3173752 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.53 | 44.0 | 2.54e-01 | 100.0% | 92.7% |
| 3483301 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.53 | 41.0 | 3.18e-01 | 98.1% | 62.0% |
| 4934216 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.52 | 35.0 | 2.82e-01 | 90.6% | 30.0% |
| 3733685 | 109.21.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 | 0.52 | 44.0 | 2.47e-01 | 100.0% | 7.9% |
| 3768377 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 41.0 | 3.37e-01 | 100.0% | 72.5% |
| 3641528 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 41.0 | 2.59e-01 | 100.0% | 18.3% |
| 4288812 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.51 | 39.0 | 2.52e-01 | 100.0% | 14.8% |
| 4946594 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 45.0 | 3.70e-01 | 100.0% | 74.0% |
| 3818287 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 2.73e-01 | 100.0% | 44.7% |
| 3900309 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.50 | 36.0 | 2.24e-01 | 84.9% | 80.7% |
| 4932765 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.16e-01 | 100.0% | 50.0% |
| 3244183 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.50 | 43.0 | 2.66e-01 | 100.0% | 64.2% |
D2
medium
residues 72-138