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NC_062744.1__YP_010356580.1__M1M22_gp063__00052
Bact-VirNC_062744.1__YP_010356580.1__M1M22_gp063__00052
Identity
- Accession:
- NC_062744 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
TaxID: 2745643
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-54
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 48.0 | 3.52e-01 | 71.4% | 72.9% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.68 | 48.0 | 3.31e-01 | 73.5% | 28.0% |
| 7f16R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.68 | 48.0 | 2.97e-01 | 73.5% | 16.2% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 47.0 | 3.98e-01 | 73.5% | 70.0% |
| 6j8eA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.67 | 47.0 | 3.66e-01 | 73.5% | 86.8% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.66 | 57.0 | 4.08e-01 | 100.0% | 81.0% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.66 | 46.0 | 3.53e-01 | 73.5% | 51.3% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 49.0 | 4.63e-01 | 79.6% | 87.9% |
| 3q23A03 | 6.10.140.1360 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 47.0 | 4.14e-01 | 77.6% | 90.3% |
| 1d9yA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.65 | 52.0 | 3.74e-01 | 91.8% | 83.7% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 50.0 | 3.41e-01 | 95.9% | 24.7% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 44.0 | 3.47e-01 | 81.6% | 35.3% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.63 | 44.0 | 4.10e-01 | 81.6% | 59.0% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 44.0 | 3.25e-01 | 75.5% | 37.3% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 45.0 | 3.88e-01 | 77.6% | 50.6% |
| 3g0tA02 | 6.10.120.10 | Special › Helix non-globular › 434 Repressor (Amino-terminal Domain) › Bacterial aspartate aminotransferase, helical domain | 0.61 | 45.0 | 4.07e-01 | 100.0% | 57.1% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.61 | 51.0 | 4.41e-01 | 95.9% | 68.8% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 3.64e-01 | 81.6% | 48.9% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.58 | 49.0 | 3.35e-01 | 98.0% | 76.0% |
| 2hn1A02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.57 | 39.0 | 3.08e-01 | 81.6% | 34.6% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 44.0 | 4.43e-01 | 87.8% | 82.4% |
| 3lyeA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.56 | 42.0 | 2.65e-01 | 83.7% | 21.1% |
| 1noyB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 47.0 | 3.09e-01 | 100.0% | 96.9% |
| 4i1eA03 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.55 | 46.0 | 3.42e-01 | 98.0% | 87.8% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.54 | 39.0 | 2.94e-01 | 77.6% | 36.4% |
| 1vw4801 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 41.0 | 3.65e-01 | 83.7% | 93.2% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.53 | 44.0 | 4.07e-01 | 95.9% | 70.8% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 44.0 | 4.00e-01 | 100.0% | 72.1% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 44.0 | 3.43e-01 | 95.9% | 82.2% |
| 1bvp101 | 1.10.250.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 | 0.51 | 42.0 | 3.29e-01 | 100.0% | 45.8% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 42.0 | 3.17e-01 | 93.9% | 60.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003681 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.69 | 56.0 | 3.22e-01 | 87.8% | 13.4% |
| 3911035 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.68 | 58.0 | 4.12e-01 | 98.0% | 32.9% |
| 5048467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 3.50e-01 | 79.6% | 29.7% |
| 3587854 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.65 | 50.0 | 4.83e-01 | 83.7% | 76.4% |
| 5032595 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.65 | 57.0 | 3.24e-01 | 100.0% | 9.8% |
| 4936762 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.64 | 55.0 | 4.52e-01 | 93.9% | 62.4% |
| 3367387 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.64 | 44.0 | 3.55e-01 | 73.5% | 60.0% |
| 4022503 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.63 | 52.0 | 3.59e-01 | 100.0% | 24.9% |
| 4005523 | 3860.1.1.167 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › MscS_porin | 0.63 | 44.0 | 3.06e-01 | 73.5% | 23.7% |
| 4988650 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.62 | 47.0 | 3.19e-01 | 81.6% | 50.3% |
| 3789558 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.61 | 51.0 | 3.39e-01 | 89.8% | 24.6% |
| 4369324 | 101.1.1.142 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › clamp_Gag1-like | 0.61 | 41.0 | 3.94e-01 | 85.7% | 61.8% |
| 3578256 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.60 | 45.0 | 4.09e-01 | 81.6% | 87.1% |
| 3303791 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 50.0 | 2.88e-01 | 100.0% | 12.6% |
| 3589151 | 829.1.1.2 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › HNHc_6 | 0.60 | 53.0 | 3.95e-01 | 100.0% | 55.2% |
| 407167 | 3824.1.1.1 ↗ | alpha bundles › HIV Rev › HIV Rev › HIV Rev › REV | 0.59 | 46.0 | 4.31e-01 | 85.7% | 77.4% |
| 3792423 | 4207.1.1.38 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF30341 | 0.59 | 46.0 | 3.40e-01 | 85.7% | 40.8% |
| 3508862 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.58 | 41.0 | 3.21e-01 | 75.5% | 66.7% |
| 3205434 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.57 | 47.0 | 4.30e-01 | 91.8% | 70.8% |
| 3219672 | 601.1.2.79 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like | 0.56 | 47.0 | 3.16e-01 | 95.9% | 99.0% |
| 3468013 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.55 | 44.0 | 3.52e-01 | 89.8% | 43.0% |
| 4178099 | 632.22.1.176 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF27734 | 0.55 | 44.0 | 3.12e-01 | 89.8% | 29.7% |
| 3179363 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.53 | 46.0 | 2.88e-01 | 100.0% | 56.6% |
| 2814626 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 40.0 | 2.49e-01 | 85.7% | 60.0% |
| 1348567 | 6147.1.1.1 ↗ | alpha arrays › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › Dbr1_C | 0.51 | 43.0 | 3.67e-01 | 100.0% | 92.0% |