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NC_062744.1__YP_010356582.1__M1M22_gp061__00054
Bact-VirNC_062744.1__YP_010356582.1__M1M22_gp061__00054
Identity
- Accession:
- NC_062744 ↗
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Taxonomy
TaxID: 2745643
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-96
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.82 | 74.0 | 7.48e-01 | 96.8% | 100.0% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.82 | 76.0 | 7.27e-01 | 100.0% | 91.6% |
| 3w6vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 50.0 | 4.71e-01 | 79.8% | 93.7% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.62 | 47.0 | 4.42e-01 | 79.8% | 87.6% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.61 | 39.0 | 3.85e-01 | 74.5% | 59.2% |
| 1nthA00 | 3.20.20.460 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Monomethylamine methyltransferase MtmB | 0.61 | 45.0 | 2.92e-01 | 78.7% | 66.1% |
| 2zcxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 44.0 | 3.41e-01 | 79.8% | 67.8% |
| 1f5qB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 46.0 | 4.47e-01 | 94.7% | 78.0% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 45.0 | 3.46e-01 | 85.1% | 64.1% |
| 2azjA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 41.0 | 2.96e-01 | 76.6% | 75.4% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 44.0 | 4.39e-01 | 86.2% | 81.4% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 47.0 | 4.67e-01 | 92.6% | 95.0% |
| 1ugoA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.56 | 38.0 | 3.77e-01 | 70.2% | 82.8% |
| 3gi8C00 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.54 | 48.0 | 3.12e-01 | 98.9% | 71.5% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 41.0 | 3.76e-01 | 84.0% | 86.4% |
| 3owaA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 39.0 | 3.53e-01 | 78.7% | 84.1% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 47.0 | 3.68e-01 | 100.0% | 89.6% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.53 | 43.0 | 3.61e-01 | 89.4% | 69.5% |
| 4a15A03 | 1.10.275.40 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.53 | 38.0 | 3.34e-01 | 75.5% | 71.4% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 39.0 | 3.30e-01 | 78.7% | 87.9% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 41.0 | 3.37e-01 | 85.1% | 81.4% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.52 | 41.0 | 3.56e-01 | 88.3% | 77.4% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.50 | 42.0 | 3.72e-01 | 93.6% | 68.8% |
| 6ldkA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.50 | 38.0 | 3.16e-01 | 80.9% | 87.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4146099 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.84 | 75.0 | 7.53e-01 | 94.7% | 100.0% |
| 4067934 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.84 | 69.0 | 7.12e-01 | 87.2% | 100.0% |
| 4559046 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.83 | 77.0 | 7.42e-01 | 98.9% | 94.3% |
| 4051624 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.83 | 76.0 | 7.34e-01 | 97.9% | 92.4% |
| 4281674 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.83 | 74.0 | 7.16e-01 | 95.7% | 94.3% |
| 4606821 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.83 | 75.0 | 7.37e-01 | 96.8% | 96.0% |
| 4524648 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 76.0 | 7.28e-01 | 98.9% | 94.3% |
| 3385990 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 76.0 | 7.30e-01 | 98.9% | 94.3% |
| 4102935 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 76.0 | 7.30e-01 | 98.9% | 92.4% |
| 4346134 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.81 | 75.0 | 7.27e-01 | 98.9% | 94.2% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.81 | 75.0 | 7.37e-01 | 98.9% | 98.0% |
| 4270831 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.81 | 75.0 | 7.23e-01 | 98.9% | 94.3% |
| 4601417 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.81 | 74.0 | 7.42e-01 | 97.9% | 100.0% |
| 4266587 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.80 | 73.0 | 7.32e-01 | 97.9% | 100.0% |
| 4125972 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.79 | 73.0 | 7.13e-01 | 97.9% | 94.0% |
| 144712 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.79 | 73.0 | 6.99e-01 | 100.0% | 90.7% |
| 4379676 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.79 | 73.0 | 7.02e-01 | 98.9% | 96.2% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.79 | 73.0 | 7.13e-01 | 98.9% | 95.0% |
| 5049243 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.60 | 45.0 | 3.55e-01 | 79.8% | 82.9% |
| 5050709 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.59 | 42.0 | 3.72e-01 | 75.5% | 69.7% |
| 3728529 | 4967.1.1.16 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › TERT_C | 0.59 | 48.0 | 3.90e-01 | 88.3% | 89.7% |
| 3932067 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.57 | 49.0 | 4.66e-01 | 94.7% | 81.8% |
| 5042223 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.55 | 40.0 | 3.53e-01 | 76.6% | 60.7% |
| 3915018 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.55 | 40.0 | 3.03e-01 | 75.5% | 57.0% |
| 3955270 | 191.1.1.24 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_34 | 0.55 | 43.0 | 3.57e-01 | 83.0% | 85.5% |
| 3736829 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.55 | 48.0 | 4.46e-01 | 97.9% | 81.7% |
| 5050887 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 40.0 | 3.32e-01 | 75.5% | 73.4% |
| 4669377 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.54 | 45.0 | 3.69e-01 | 95.7% | 80.5% |
| 4967865 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 40.0 | 2.68e-01 | 79.8% | 65.9% |
| 3303885 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.54 | 46.0 | 4.37e-01 | 100.0% | 77.0% |
| 4017649 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 47.0 | 3.92e-01 | 100.0% | 68.2% |
| 3599042 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.53 | 41.0 | 3.16e-01 | 84.0% | 90.9% |
| 4020039 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.52 | 43.0 | 3.26e-01 | 93.6% | 96.4% |
| 4457335 | 3558.1.1.1 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain › EcoR124_C | 0.51 | 42.0 | 4.01e-01 | 92.6% | 94.8% |
| 3934929 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.50 | 37.0 | 3.63e-01 | 76.6% | 82.0% |
| 4012685 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 39.0 | 3.32e-01 | 95.7% | 49.1% |
| 3837728 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.50 | 41.0 | 3.67e-01 | 89.4% | 65.2% |
D2
medium
residues 107-174
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tu3J00 | 1.20.5.730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.79 | 56.0 | 6.19e-01 | 76.5% | 94.3% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.77 | 53.0 | 4.74e-01 | 72.1% | 52.6% |
| 3e98B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.75 | 56.0 | 4.14e-01 | 79.4% | 32.2% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 52.0 | 4.30e-01 | 83.8% | 77.8% |