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NC_062745.1__YP_010356643.1__M1M23_gp30__00030

Bact-Vir

NC_062745.1__YP_010356643.1__M1M23_gp30__00030

Identity

Accession:
NC_062745 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forsetiviridae› Freyavirus› Polaribacter_phage_Danklef_1

TaxID: 2745646

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-101
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wy9A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 50.0 4.69e-01 76.1% 93.7%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 51.0 5.26e-01 98.9% 97.7%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 32.0 3.61e-01 73.9% 71.8%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.57 49.0 4.68e-01 97.8% 89.1%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 37.0 2.72e-01 71.7% 52.4%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 31.0 3.03e-01 92.4% 51.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486206 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 50.0 5.38e-01 97.8% 94.7%
3535287 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.62 45.0 4.93e-01 85.9% 94.7%
4020718 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.62 42.0 3.05e-01 96.7% 24.2%
4682218 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.58 42.0 2.95e-01 78.3% 62.5%
3907851 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.57 44.0 3.16e-01 83.7% 78.6%
3377590 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.57 51.0 4.79e-01 100.0% 81.7%
3851865 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.56 42.0 3.07e-01 82.6% 81.1%
4567417 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.55 49.0 4.54e-01 100.0% 78.3%
3385710 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.54 36.0 3.10e-01 100.0% 39.4%
3237521 1075.4.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.54 41.0 3.04e-01 82.6% 83.5%
4940432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 30.0 3.11e-01 92.4% 56.7%
4999429 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 46.0 3.53e-01 97.8% 97.2%
4929153 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 46.0 3.79e-01 100.0% 78.8%
5080684 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 28.0 2.42e-01 88.0% 31.0%
D2 high residues 103-212
PDB
Domain cluster: rep: MK170447__AZF89926.1__X__00070__D106-210
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 47.5 2.30e-12 100.0% 56.4%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 29.0 3.89e-01 91.8% 100.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 34.0 3.80e-01 93.6% 77.5%
4tquS02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 25.0 3.13e-01 95.5% 68.8%
2mcaA00 2.60.40.2890 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 0.53 37.0 3.87e-01 99.1% 76.7%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 37.0 3.81e-01 90.9% 73.8%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 33.0 3.38e-01 96.4% 63.3%
3fcgB00 2.60.40.3110 Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein 0.53 30.0 3.69e-01 76.4% 87.3%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.53 31.0 3.39e-01 86.4% 69.1%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 27.0 2.87e-01 88.2% 50.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 4.02e-01 90.9% 84.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 29.0 3.52e-01 99.1% 85.9%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.51 32.0 3.32e-01 83.6% 65.7%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.46e-01 92.7% 76.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4423403 330.1.1.14 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.85 79.0 7.15e-01 99.1% 79.3%
3658595 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.68 34.0 4.14e-01 82.7% 74.3%
3811281 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 35.0 3.98e-01 88.2% 68.2%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.62 27.0 3.72e-01 83.6% 82.0%
4945655 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 33.0 3.45e-01 91.8% 62.0%
3633556 2485.2.1.0 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.57 48.0 4.31e-01 91.8% 96.1%
3287981 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.55 33.0 3.85e-01 91.8% 85.3%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 32.0 4.06e-01 98.2% 98.5%
4443040 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 29.0 3.02e-01 95.5% 53.8%
5058565 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.53 32.0 3.58e-01 80.0% 73.3%
5040303 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.51 32.0 3.74e-01 92.7% 87.5%
5040146 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.51 33.0 3.74e-01 90.0% 85.9%
3511338 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.52e-01 79.1% 76.7%
5040150 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.51 34.0 3.80e-01 91.8% 88.2%
5082233 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.51 30.0 3.46e-01 79.1% 77.6%
5069192 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 31.0 3.42e-01 82.7% 74.4%
5082333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.60e-01 89.1% 82.4%
3600173 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.54e-01 92.7% 75.0%
4426276 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 27.0 3.26e-01 90.0% 80.0%
5062868 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.51 34.0 3.90e-01 92.7% 95.0%
3249483 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 28.0 3.14e-01 70.9% 67.8%
5056376 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 31.0 3.58e-01 93.6% 86.3%