←Back to structures

NC_062745.1__YP_010356673.1__M1M23_gp60__00060

Bact-Vir

Identity

Accession:: NC_062745 ↗
Kingdom:: phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forsetiviridae› Freyavirus› Polaribacter_phage_Danklef_1

TaxID: 2745646

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-75

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5af7B03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.67	47.0	3.73e-01	73.3%	41.2%
4n81A01	3.30.540.10	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1	0.65	40.0	3.28e-01	85.3%	33.8%
6lpfA01	1.10.730.20	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 ›	0.55	37.0	2.86e-01	73.3%	31.3%
2ek5B00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	48.0	4.32e-01	100.0%	99.1%
5zyrA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	47.0	3.77e-01	97.3%	74.8%
3hwcA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.54	44.0	3.30e-01	94.7%	82.9%
3ripA02	1.20.120.1900	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain	0.52	44.0	3.04e-01	94.7%	80.6%
6tqfA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.51	43.0	2.83e-01	100.0%	26.9%
2kz6A01	6.10.140.1310	Special › Helix non-globular › Helix Hairpins ›	0.51	46.0	4.48e-01	98.7%	96.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932665	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.68	47.0	4.43e-01	76.0%	60.0%
5012947	1075.3.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1	0.58	49.0	3.64e-01	100.0%	79.1%
2496734	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	49.0	3.97e-01	97.3%	74.8%
334009	101.1.2.135 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2	0.57	44.0	3.64e-01	85.3%	81.2%
None	—		0.56	48.0	3.22e-01	98.7%	48.1%
3470561	109.4.1.80 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3	0.55	39.0	2.37e-01	100.0%	10.4%
3736786	304.112.1.0 ↗	a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain	0.54	43.0	3.17e-01	100.0%	31.7%
3183367	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.52	42.0	2.91e-01	89.3%	80.0%
3431346	2003.1.1.51 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP	0.52	37.0	2.52e-01	77.3%	66.5%
3903618	219.1.1.54 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98	0.51	45.0	3.06e-01	100.0%	31.7%