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NC_062745.1__YP_010356677.1__M1M23_gp64__00064

Bact-Vir

NC_062745.1__YP_010356677.1__M1M23_gp64__00064

Identity

Accession:
NC_062745 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-76
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.73 60.0 3.93e-01 100.0% 20.1%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.99e-01 100.0% 93.4%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 4.68e-01 98.4% 44.2%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.79e-01 100.0% 98.6%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.23e-01 100.0% 71.6%
4b0zA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 51.0 3.51e-01 100.0% 22.5%
1rz4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.38e-01 100.0% 54.3%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 60.0 5.46e-01 100.0% 76.7%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 5.16e-01 100.0% 92.5%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.20e-01 100.0% 71.9%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.39e-01 100.0% 84.0%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.28e-01 100.0% 83.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 5.33e-01 100.0% 78.8%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.15e-01 100.0% 81.2%
1fp2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.87e-01 100.0% 67.7%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.96e-01 100.0% 82.2%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.63 39.0 3.62e-01 79.7% 48.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 5.09e-01 96.9% 83.1%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.45e-01 100.0% 96.9%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 5.15e-01 100.0% 96.8%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 5.08e-01 100.0% 98.3%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 5.36e-01 100.0% 98.5%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 3.76e-01 100.0% 39.6%
1fokA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.76e-01 100.0% 73.6%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.64e-01 100.0% 73.1%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 5.13e-01 100.0% 95.2%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.60 44.0 3.91e-01 81.2% 80.2%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.60 52.0 5.12e-01 100.0% 94.3%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.59 51.0 4.81e-01 100.0% 84.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.91e-01 100.0% 43.8%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.63e-01 100.0% 81.0%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.83e-01 100.0% 94.0%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.45e-01 100.0% 80.5%
3qrxA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 42.0 4.15e-01 87.5% 79.4%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.40e-01 100.0% 82.7%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.40e-01 100.0% 89.2%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.35e-01 100.0% 77.9%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.45e-01 96.9% 47.2%
5v89A02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.54 42.0 3.73e-01 90.6% 91.2%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 43.0 4.26e-01 100.0% 91.2%
3uo9C01 1.10.238.210 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.52 39.0 3.76e-01 92.2% 72.7%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 3.30e-01 98.4% 54.8%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.50 42.0 3.67e-01 92.2% 76.0%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504478 101.1.2.81 alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.77 65.0 5.94e-01 100.0% 70.6%
None 0.73 62.0 4.89e-01 96.9% 46.2%
223908 101.1.2.45 alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP 0.73 60.0 5.23e-01 100.0% 58.3%
3607004 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.71 54.0 5.13e-01 100.0% 70.7%
4962936 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.69 54.0 4.42e-01 100.0% 44.8%
3730881 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.69 52.0 5.26e-01 100.0% 83.1%
4643653 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.64e-01 96.9% 100.0%
3183990 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.68 51.0 4.45e-01 100.0% 51.4%
1291877 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.67 50.0 4.58e-01 98.4% 59.6%
5011311 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.60e-01 100.0% 88.0%
2705 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.67 60.0 5.48e-01 100.0% 77.6%
1182022 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.67 52.0 5.33e-01 100.0% 90.0%
1068636 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.67 48.0 5.16e-01 100.0% 92.5%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.33e-01 100.0% 96.5%
3588502 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.67 55.0 5.23e-01 100.0% 78.7%
4990436 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.67 58.0 5.53e-01 100.0% 86.7%
2701 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.66 57.0 5.20e-01 100.0% 71.9%
3970076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 5.04e-01 96.9% 92.0%
4390915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.41e-01 98.4% 50.9%
2760149 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.66 53.0 4.82e-01 100.0% 64.1%
4999062 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.66 53.0 4.73e-01 100.0% 61.1%
5078990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.63e-01 96.9% 100.0%
5071075 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.66 52.0 4.79e-01 100.0% 67.1%
4959921 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.96e-01 100.0% 71.8%
4483905 101.1.2.366 alpha arrays › HTH › HTH › winged helix domain › DUF3161 0.65 56.0 5.22e-01 100.0% 77.1%
4379440 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 56.0 4.69e-01 100.0% 58.3%
4039627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 50.0 3.75e-01 98.4% 31.1%
3405714 101.1.2.829 alpha arrays › HTH › HTH › winged helix domain › PF29583 0.65 54.0 5.18e-01 96.9% 94.7%
4112271 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.82e-01 98.4% 74.7%
3801541 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.65 50.0 4.25e-01 100.0% 49.1%
3387885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.20e-01 100.0% 89.2%
4997045 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 4.38e-01 100.0% 44.8%
5016743 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.24e-01 100.0% 93.3%
3405208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 5.18e-01 98.4% 90.0%
3201582 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.64 54.0 4.29e-01 100.0% 46.4%
4973758 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 50.0 5.05e-01 100.0% 89.1%
5072661 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.07e-01 98.4% 78.8%
4928467 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 5.04e-01 93.8% 95.0%
3502057 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.63 46.0 4.20e-01 100.0% 58.0%
4049886 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.61e-01 100.0% 58.2%
5050884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.78e-01 98.4% 92.7%
5048178 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.96e-01 100.0% 83.7%
3826771 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 45.0 3.77e-01 100.0% 41.6%
4237129 101.1.2.238 alpha arrays › HTH › HTH › winged helix domain › DUF1376 0.62 50.0 4.35e-01 100.0% 55.5%
3804517 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.37e-01 96.9% 63.5%
3385441 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.96e-01 100.0% 84.0%
5052974 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.38e-01 84.4% 70.7%
4493829 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 53.0 4.61e-01 100.0% 71.0%
3987359 101.1.2.272 alpha arrays › HTH › HTH › winged helix domain › DUF1803 0.60 42.0 4.26e-01 95.3% 75.4%
4069317 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 53.0 3.79e-01 100.0% 91.1%
3957222 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.35e-01 100.0% 57.3%
3712117 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.60 51.0 4.95e-01 100.0% 88.0%
5056656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.77e-01 98.4% 47.3%
3412959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 5.08e-01 100.0% 95.4%
5013330 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.11e-01 100.0% 61.1%
4835251 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.59 44.0 4.39e-01 87.5% 79.4%
5065253 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.59 50.0 4.67e-01 100.0% 77.5%
4008778 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 4.57e-01 100.0% 92.7%
3997738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.15e-01 100.0% 65.9%
3518446 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.55e-01 100.0% 98.2%
3819614 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.19e-01 100.0% 74.7%
3597265 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 45.0 4.43e-01 90.6% 85.7%
5010332 101.1.2.234 alpha arrays › HTH › HTH › winged helix domain › DUF6995 0.57 45.0 4.42e-01 100.0% 82.9%
4928632 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.56 46.0 4.43e-01 100.0% 82.7%
3906495 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.56 46.0 3.98e-01 90.6% 58.0%
4928345 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.50e-01 95.3% 98.6%
4099378 2003.1.5.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.55 47.0 3.13e-01 98.4% 85.4%
3224409 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 44.0 3.94e-01 98.4% 61.9%
4679965 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.54 43.0 4.26e-01 98.4% 85.7%
3825121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.23e-01 100.0% 82.5%
3225588 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.53 45.0 3.66e-01 100.0% 73.3%
3732963 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.53 43.0 2.90e-01 93.8% 84.0%
2738537 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 41.0 4.11e-01 92.2% 89.4%
3475831 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.51 42.0 3.93e-01 100.0% 82.0%
3639723 320.4.1.0 a+b two layers › R3H domain-like › PUB domain › PUB domain 0.50 41.0 3.35e-01 100.0% 66.9%