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NC_062746.1__YP_010356710.1__M1M24_gp21__00021

Bact-Vir

Identity

Accession:: NC_062746 ↗
Kingdom:: phage

Quality

68.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forsetiviridae› Freyavirus› Polaribacter_phage_Freya_1

TaxID: 2745662

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-55

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4toiA02	1.10.287.610	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.72	46.0	4.81e-01	96.2%	72.9%
1wveC00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.68	57.0	5.17e-01	96.2%	88.0%
3hinA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.63	45.0	4.51e-01	98.1%	72.7%
3rfwA01	1.10.8.1040	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.63	43.0	4.19e-01	73.6%	80.3%
2dodA00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.60	47.0	4.24e-01	92.5%	61.0%
1fgmA05	1.20.245.10	Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5	0.58	45.0	2.78e-01	86.8%	97.1%
1x0uA02	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.56	40.0	2.66e-01	79.2%	16.7%
3pr6A00	3.30.450.70	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.55	43.0	3.28e-01	92.5%	74.5%
3ha2A00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.54	41.0	2.90e-01	83.0%	100.0%
2aj6A00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	41.0	3.30e-01	94.3%	95.0%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4283877	230.3.1.1 ↗	a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS	0.75	58.0	4.06e-01	83.0%	35.0%
3654783	230.3.1.1 ↗	a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS	0.75	57.0	4.27e-01	81.1%	42.4%
4241107	101.1.2.90 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_9	0.74	53.0	3.46e-01	77.4%	21.3%
3701853	5071.1.1.1 ↗	alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge	0.71	49.0	4.64e-01	73.6%	96.9%
3274887	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.70	56.0	5.48e-01	92.5%	88.3%
3209189	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.70	50.0	3.76e-01	77.4%	36.3%
3903163	101.1.17.16 ↗	alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th	0.68	55.0	5.32e-01	92.5%	88.3%
3439489	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.67	54.0	4.63e-01	92.5%	58.9%
4170537	230.3.1.1 ↗	a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS	0.66	47.0	3.61e-01	77.4%	35.4%
3317162	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.66	54.0	5.16e-01	96.2%	80.0%
3341560	101.1.17.18 ↗	alpha arrays › HTH › HTH › FF domain › FF_PRPF40A	0.65	54.0	4.96e-01	94.3%	77.1%
3225117	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.63	49.0	4.72e-01	92.5%	78.5%
3537310	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.62	49.0	4.66e-01	92.5%	84.6%
3837701	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.61	47.0	4.55e-01	92.5%	81.5%
None	—		0.61	49.0	3.13e-01	94.3%	17.6%
5018899	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.56	46.0	4.42e-01	98.1%	90.5%