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NC_062746.1__YP_010356728.1__M1M24_gp39__00039

Bact-Vir

NC_062746.1__YP_010356728.1__M1M24_gp39__00039

Identity

Accession:
NC_062746 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forsetiviridae› Freyavirus› Polaribacter_phage_Freya_1

TaxID: 2745662

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 59.0 6.01e-01 93.5% 86.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 60.0 5.91e-01 95.2% 83.1%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 59.0 5.54e-01 95.2% 72.4%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 5.36e-01 80.6% 100.0%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 48.0 4.89e-01 85.5% 75.8%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 56.0 5.60e-01 100.0% 95.4%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 5.15e-01 93.5% 83.3%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 52.0 4.95e-01 93.5% 76.0%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 52.0 4.89e-01 96.8% 75.3%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 52.0 5.03e-01 96.8% 83.3%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 48.0 4.87e-01 91.9% 85.7%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 43.0 4.28e-01 77.4% 92.5%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.61 42.0 3.94e-01 100.0% 56.8%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.61 46.0 4.31e-01 83.9% 71.8%
4bjaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 48.0 3.65e-01 100.0% 72.5%
1uxdA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 41.0 4.18e-01 77.4% 78.0%
3ezqA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 48.0 4.09e-01 100.0% 65.2%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.58 42.0 4.35e-01 93.5% 83.1%
3rd8A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.57 39.0 4.06e-01 72.6% 98.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.56 34.0 3.12e-01 79.0% 44.7%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 49.0 4.43e-01 100.0% 82.8%
3aagA01 3.40.1380.40 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › 0.56 45.0 3.55e-01 100.0% 40.6%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.55 46.0 3.72e-01 96.8% 90.9%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 39.0 3.83e-01 100.0% 77.6%
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.52 37.0 3.80e-01 87.1% 85.0%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 39.0 3.79e-01 100.0% 75.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1563574 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 56.0 5.60e-01 100.0% 95.4%
3702894 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 42.0 4.63e-01 71.0% 80.0%
3971803 1112.1.1.0 ↗ alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.66 48.0 4.89e-01 77.4% 95.0%
4032282 101.1.4.29 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF2316 0.65 56.0 5.14e-01 100.0% 82.4%
5024287 103.5.1.11 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 0.63 52.0 4.91e-01 98.4% 76.0%
4481619 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.62 53.0 5.12e-01 98.4% 88.6%
4926934 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.61 45.0 4.01e-01 90.3% 54.4%
4668451 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.60 38.0 4.29e-01 95.2% 100.0%
4100080 4953.1.1.3 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C 0.60 45.0 4.53e-01 83.9% 93.8%
4665947 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.58 40.0 4.08e-01 98.4% 77.6%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.57 39.0 3.96e-01 98.4% 71.4%
3253992 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.57 48.0 3.84e-01 100.0% 50.0%
4957076 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.54 41.0 4.20e-01 93.5% 86.7%
4270580 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 45.0 2.98e-01 100.0% 23.7%
3600499 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.53 45.0 3.61e-01 100.0% 54.9%
5009932 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.52 44.0 2.78e-01 100.0% 41.9%