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NC_062746.1__YP_010356742.1__M1M24_gp53__00053

Bact-Vir

NC_062746.1__YP_010356742.1__M1M24_gp53__00053

Identity

Accession:
NC_062746 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Forsetiviridae› Freyavirus› Polaribacter_phage_Freya_1

TaxID: 2745662

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-147
PDB
Domain cluster: rep: RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00355__D10-131
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08299.18 best Bac_DnaA_C 43.6 3.30e-11 47.8% 97.1%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.91 62.0 7.50e-01 71.3% 100.0%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.86 61.0 6.88e-01 74.3% 91.6%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.76 42.0 3.14e-01 91.9% 23.9%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 39.0 3.34e-01 99.3% 36.5%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 33.0 3.60e-01 89.0% 58.0%
4akvA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 43.0 3.79e-01 93.4% 50.0%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 32.0 3.12e-01 84.6% 45.3%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 41.0 3.27e-01 93.4% 36.3%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 42.0 3.55e-01 93.4% 47.0%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 36.0 4.02e-01 74.3% 81.1%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.57 40.0 4.58e-01 79.4% 100.0%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 40.0 3.51e-01 93.4% 50.0%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 41.0 3.67e-01 93.4% 55.3%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.55 42.0 3.93e-01 93.4% 65.8%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.55 43.0 3.17e-01 81.6% 65.8%
2r40D00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.54 45.0 3.71e-01 87.5% 60.1%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 38.0 3.57e-01 73.5% 82.1%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 41.0 3.50e-01 86.8% 63.0%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 35.0 3.92e-01 72.1% 91.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4102935 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 63.0 7.18e-01 72.8% 92.4%
4601417 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 61.0 7.37e-01 72.1% 100.0%
4051624 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 62.0 7.13e-01 74.3% 92.4%
4524648 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 62.0 7.12e-01 72.1% 92.4%
4604979 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 62.0 7.14e-01 72.1% 93.3%
4174198 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 63.0 7.33e-01 75.0% 98.0%
4106860 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 61.0 7.25e-01 70.6% 100.0%
4270831 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 63.0 7.19e-01 72.8% 94.3%
4266587 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 60.0 7.18e-01 72.1% 100.0%
4559046 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 63.0 7.23e-01 77.2% 96.2%
4346134 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 61.0 7.04e-01 75.0% 95.2%
4606105 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 59.0 6.91e-01 70.6% 95.0%
4197050 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 64.0 7.26e-01 77.2% 98.1%
4281674 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 65.0 7.39e-01 77.2% 100.0%
3385990 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 62.0 7.07e-01 75.0% 96.2%
4606821 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 60.0 7.04e-01 75.0% 98.0%
4533441 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.85 58.0 6.89e-01 71.3% 100.0%
4379676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.84 62.0 7.11e-01 77.9% 99.0%
3740611 109.62.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › Ebp1_C 0.72 40.0 3.29e-01 91.2% 32.2%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 39.0 4.59e-01 80.1% 76.8%
3377749 3843.1.1.15 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › ETR1_N 0.65 33.0 3.84e-01 84.6% 67.0%
3904595 611.2.1.0 ↗ alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.64 30.0 3.25e-01 83.1% 50.4%
5000679 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 41.0 4.44e-01 82.4% 86.4%
3027028 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.55 37.0 4.07e-01 94.1% 85.3%
3237269 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.55 45.0 3.53e-01 86.0% 61.8%
3417088 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 39.0 3.31e-01 73.5% 78.1%
3409535 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.53 44.0 3.35e-01 91.2% 91.8%
3828317 101.1.10.18 ↗ alpha arrays › HTH › HTH › Cyclin-like › BRF2-like_C_cyclin_rpt 0.52 36.0 3.53e-01 70.6% 78.7%
4393144 604.39.1.9 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.52 44.0 3.74e-01 93.4% 95.7%
3390609 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 37.0 3.36e-01 72.1% 72.7%
3994626 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 44.0 3.78e-01 93.4% 92.3%