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NC_062746.1__YP_010356752.1__M1M24_gp63__00063

Bact-Vir

NC_062746.1__YP_010356752.1__M1M24_gp63__00063

Identity

Accession:
NC_062746 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-72
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 58.0 5.93e-01 75.4% 88.1%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 5.39e-01 70.5% 76.2%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.04e-01 70.5% 70.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 5.62e-01 73.8% 87.9%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.66e-01 70.5% 98.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 4.69e-01 73.8% 57.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 4.57e-01 77.0% 56.7%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.43e-01 77.0% 93.8%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.55e-01 77.0% 90.2%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.18e-01 77.0% 77.8%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 5.44e-01 73.8% 84.5%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 4.22e-01 77.0% 43.4%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.68e-01 75.4% 94.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 5.05e-01 78.7% 75.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.06e-01 77.0% 79.5%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 4.11e-01 77.0% 43.5%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 5.35e-01 77.0% 92.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.80e-01 75.4% 63.7%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.89e-01 75.4% 68.0%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.99e-01 75.4% 70.8%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 4.73e-01 78.7% 60.7%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 4.83e-01 82.0% 83.1%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 3.92e-01 75.4% 38.4%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.77e-01 75.4% 73.7%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.71 55.0 4.53e-01 83.6% 49.5%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 49.0 4.34e-01 70.5% 54.1%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 4.74e-01 80.3% 62.5%
2p8tA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.84e-01 78.7% 66.7%
2e7xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.74e-01 80.3% 98.1%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.05e-01 78.7% 39.5%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 5.47e-01 78.7% 92.7%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.36e-01 82.0% 90.5%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.13e-01 70.5% 47.9%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.42e-01 83.6% 90.5%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 52.0 5.29e-01 80.3% 90.2%
1xn7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.01e-01 83.6% 91.0%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.77e-01 83.6% 57.8%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.19e-01 75.4% 53.8%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.68e-01 82.0% 62.5%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.25e-01 83.6% 79.1%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.49e-01 75.4% 64.6%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.04e-01 83.6% 38.6%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.96e-01 82.0% 80.8%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.26e-01 83.6% 87.1%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.48e-01 77.0% 61.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.01e-01 80.3% 43.4%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 4.11e-01 78.7% 53.2%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.53e-01 77.0% 72.2%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 5.03e-01 75.4% 88.5%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 51.0 4.21e-01 85.2% 72.3%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.90e-01 85.2% 81.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 3.77e-01 83.6% 39.7%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.64 51.0 4.06e-01 88.5% 45.2%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.73e-01 83.6% 78.3%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 4.20e-01 80.3% 69.0%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.61 46.0 3.54e-01 82.0% 72.2%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 40.0 3.94e-01 70.5% 70.1%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 46.0 4.12e-01 86.9% 63.2%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.24e-01 83.6% 75.4%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.54 43.0 3.34e-01 93.4% 85.2%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 46.0 3.59e-01 100.0% 98.6%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.67e-01 85.2% 65.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 37.0 3.46e-01 78.7% 59.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4993585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 58.0 5.94e-01 72.1% 78.3%
4946254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 58.0 6.60e-01 77.0% 97.8%
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.83 57.0 6.45e-01 72.1% 100.0%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 61.0 6.17e-01 78.7% 83.3%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 56.0 5.68e-01 72.1% 81.7%
4449179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 6.00e-01 78.7% 85.0%
4318089 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.80 59.0 5.99e-01 78.7% 85.0%
4610234 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.79 59.0 5.96e-01 78.7% 85.0%
1769338 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 59.0 5.65e-01 80.3% 77.1%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.77 58.0 6.08e-01 78.7% 87.3%
5051760 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.77 55.0 5.45e-01 75.4% 78.5%
4952294 101.1.2.870 alpha arrays › HTH › HTH › winged helix domain › GerE 0.76 56.0 5.83e-01 78.7% 85.5%
5028152 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 6.06e-01 91.8% 84.6%
4945932 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 4.81e-01 78.7% 90.5%
3942713 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 51.0 5.50e-01 70.5% 100.0%
3324592 101.1.1.196 alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.74 48.0 5.54e-01 75.4% 100.0%
3964709 101.1.1.118 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 0.74 50.0 5.40e-01 72.1% 88.0%
3727621 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.03e-01 80.3% 73.8%
4979155 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 4.59e-01 75.4% 55.6%
4950777 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 56.0 5.41e-01 85.2% 72.9%
3945925 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.73 56.0 4.77e-01 83.6% 79.0%
3728726 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.72 54.0 5.06e-01 80.3% 80.0%
4938254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 54.0 5.15e-01 78.7% 74.3%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 4.98e-01 91.8% 57.8%
5058447 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.67e-01 85.2% 89.1%
3987774 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.53e-01 78.7% 100.0%
4976747 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.71 48.0 3.11e-01 72.1% 21.4%
4991142 101.1.2.46 alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.70 54.0 4.99e-01 83.6% 72.5%
3947727 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 47.0 5.06e-01 70.5% 100.0%
3941471 101.1.1.11 alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.70 53.0 5.04e-01 80.3% 80.0%
4529419 101.1.1.11 alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.69 49.0 4.64e-01 75.4% 72.0%
4034594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 50.0 5.26e-01 78.7% 100.0%
3896790 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.92e-01 83.6% 78.7%
4211867 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.68 50.0 4.18e-01 80.3% 70.9%
3976262 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 53.0 4.32e-01 86.9% 72.2%
4952680 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.53e-01 77.0% 73.3%
5046275 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.30e-01 82.0% 94.5%
3972621 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.69e-01 73.8% 94.5%
235968 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.64 50.0 4.04e-01 86.9% 44.8%
4927812 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 43.0 4.13e-01 73.8% 69.3%
3284075 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.62 47.0 4.90e-01 82.0% 98.2%