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NC_062748.1__YP_010356899.1__M1M26_gp27__00027
Bact-VirNC_062748.1__YP_010356899.1__M1M26_gp27__00027
Identity
- Accession:
- NC_062748 ↗
- Kingdom:
- phage
Quality
96.4
mean pLDDT
Taxonomy
TaxID: 2745673
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-115
Domain cluster:
rep: Salt_Pond_R1_B_D2_MG_scaffold_4_prodigal-single.1__X__X__00167__D111-185
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.91 | 68.0 | 6.43e-01 | 77.5% | 69.9% |
| 4ertA01 | 1.10.490.160 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.85 | 64.0 | 4.89e-01 | 77.5% | 78.5% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.64 | 53.0 | 4.14e-01 | 95.0% | 43.8% |
| 3tp2B02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 37.0 | 3.54e-01 | 93.8% | 47.4% |
| 4behA01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 42.0 | 4.59e-01 | 100.0% | 84.4% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 40.0 | 4.04e-01 | 82.5% | 69.1% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.58 | 43.0 | 3.61e-01 | 98.8% | 45.0% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.58 | 51.0 | 4.39e-01 | 100.0% | 66.7% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.58 | 46.0 | 3.93e-01 | 92.5% | 54.4% |
| 2cufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 44.0 | 4.57e-01 | 100.0% | 94.4% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 39.0 | 3.98e-01 | 86.3% | 73.1% |
| 5mswA01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.57 | 45.0 | 4.31e-01 | 97.5% | 73.9% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 35.0 | 3.91e-01 | 93.8% | 92.9% |
| 4it1B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 44.0 | 3.61e-01 | 96.2% | 47.1% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 34.0 | 3.64e-01 | 100.0% | 74.6% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.54 | 40.0 | 3.68e-01 | 98.8% | 60.4% |
| 6pl6B01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 2.85e-01 | 90.0% | 33.6% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 32.0 | 3.47e-01 | 96.2% | 72.3% |
| 8gccA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.53 | 39.0 | 3.60e-01 | 98.8% | 60.6% |
| 2np3A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 43.0 | 3.63e-01 | 92.5% | 83.8% |
| 7wj9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 41.0 | 2.76e-01 | 85.0% | 94.2% |
| 1o3uA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 41.0 | 3.62e-01 | 86.3% | 78.3% |
| 4dbgB01 | 6.10.140.1100 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 28.0 | 3.50e-01 | 81.2% | 93.6% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.50 | 31.0 | 3.31e-01 | 96.2% | 71.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 400221 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.91 | 68.0 | 6.28e-01 | 77.5% | 65.7% |
| 4974222 | 3191.1.1.0 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs | 0.88 | 83.0 | 6.40e-01 | 100.0% | 67.5% |
| 3729821 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.88 | 83.0 | 6.46e-01 | 100.0% | 70.3% |
| 3960387 | 3191.1.1.0 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs | 0.86 | 80.0 | 5.97e-01 | 100.0% | 71.1% |
| 4960350 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.85 | 80.0 | 6.25e-01 | 100.0% | 71.0% |
| 2526776 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.85 | 63.0 | 6.04e-01 | 77.5% | 71.4% |
| 146969 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.83 | 62.0 | 4.56e-01 | 77.5% | 87.3% |
| 2671563 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.82 | 61.0 | 5.84e-01 | 77.5% | 68.5% |
| 4797697 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.76 | 69.0 | 4.97e-01 | 97.5% | 63.6% |
| 3466298 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.69 | 37.0 | 3.46e-01 | 83.7% | 44.2% |
| 3904155 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 51.0 | 5.12e-01 | 92.5% | 80.0% |
| 3477054 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 4.86e-01 | 92.5% | 98.4% |
| 4964270 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.60 | 46.0 | 4.24e-01 | 92.5% | 64.0% |
| 3250971 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.58 | 41.0 | 3.88e-01 | 75.0% | 100.0% |
| 3226202 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.57 | 46.0 | 4.28e-01 | 97.5% | 71.0% |
| 4223269 | 101.1.10.50 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF29928 | 0.57 | 47.0 | 3.79e-01 | 100.0% | 46.3% |
| 4943636 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.55 | 40.0 | 3.75e-01 | 98.8% | 61.0% |
| 4015915 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.54 | 42.0 | 4.29e-01 | 83.7% | 91.3% |
| 3353264 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.54 | 47.0 | 3.70e-01 | 95.0% | 75.8% |
| 3367692 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.54 | 47.0 | 3.88e-01 | 95.0% | 71.4% |
| 3677809 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.54 | 46.0 | 3.83e-01 | 96.2% | 69.7% |
| 3287664 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.52 | 47.0 | 3.36e-01 | 100.0% | 41.3% |
| 3807814 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 46.0 | 3.29e-01 | 100.0% | 32.0% |
| 3596992 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.52 | 35.0 | 3.23e-01 | 70.0% | 67.6% |
| 4063683 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.52 | 43.0 | 3.49e-01 | 100.0% | 45.9% |
| 3832324 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.51 | 44.0 | 3.70e-01 | 100.0% | 70.3% |