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NC_062749.1__YP_010356952.1__M1M27_gp01__00001

Bact-Vir

NC_062749.1__YP_010356952.1__M1M27_gp01__00001

Identity

Accession:
NC_062749 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Duneviridae› Ingelinevirus› Cellulophaga_phage_Ingeline_1

TaxID: 2745674

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-88
PDB
Domain cluster: rep: MN270266.1__QGJ85858.1__X__00053__D136-224
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.68e-01 90.4% 89.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 42.0 5.03e-01 84.3% 94.2%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.39e-01 96.4% 93.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 38.0 4.96e-01 73.5% 100.0%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.32e-01 85.5% 54.9%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.92e-01 97.6% 83.6%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 5.11e-01 94.0% 98.3%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.96e-01 95.2% 80.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.90e-01 97.6% 82.5%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.96e-01 91.6% 93.8%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 41.0 4.73e-01 80.7% 100.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.88e-01 94.0% 100.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 38.0 4.48e-01 80.7% 100.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.61 47.0 4.91e-01 95.2% 90.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.38e-01 96.4% 80.8%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 45.0 3.74e-01 79.5% 90.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 45.0 4.67e-01 94.0% 88.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.62e-01 91.6% 82.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.54e-01 78.3% 96.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.59e-01 78.3% 96.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 4.46e-01 78.3% 94.9%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.59 51.0 3.86e-01 96.4% 40.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.43e-01 78.3% 98.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.29e-01 78.3% 89.1%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.43e-01 75.9% 95.2%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.57 47.0 3.68e-01 95.2% 77.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.75e-01 96.4% 98.6%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.57 37.0 3.87e-01 77.1% 72.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.15e-01 81.9% 78.5%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.33e-01 77.1% 87.2%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 37.0 4.30e-01 77.1% 98.2%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.38e-01 78.3% 100.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 49.0 4.55e-01 96.4% 84.6%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 36.0 4.10e-01 80.7% 98.2%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 44.0 4.06e-01 91.6% 75.9%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.82e-01 84.3% 95.5%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.71e-01 79.5% 31.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 4.09e-01 78.3% 98.4%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.34e-01 77.1% 73.5%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 3.40e-01 80.7% 76.8%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 39.0 2.79e-01 79.5% 40.6%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 40.0 3.47e-01 85.5% 97.2%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.40e-01 77.1% 74.8%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 41.0 3.94e-01 92.8% 76.6%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 39.0 3.96e-01 88.0% 82.1%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.15e-01 77.1% 65.7%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 36.0 3.15e-01 77.1% 69.9%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 3.01e-01 79.5% 72.6%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.50 41.0 3.83e-01 92.8% 71.2%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 41.0 3.74e-01 95.2% 80.2%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 64.0 6.49e-01 95.2% 87.5%
4589595 4.1.1.447 ↗ beta barrels › SH3 › SH3 › SH3 › PF28065 0.80 59.0 6.57e-01 91.6% 100.0%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.78 66.0 6.78e-01 96.4% 95.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.77 63.0 6.14e-01 94.0% 81.1%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.77 62.0 5.87e-01 92.8% 72.0%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.87e-01 97.6% 70.6%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 42.0 4.89e-01 91.6% 89.1%
3883165 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 47.0 4.45e-01 96.4% 58.0%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 47.0 4.66e-01 97.6% 67.1%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.68 44.0 4.82e-01 91.6% 83.1%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 46.0 4.56e-01 97.6% 65.6%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 48.0 5.33e-01 96.4% 96.9%
3409896 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.67 50.0 4.69e-01 97.6% 63.8%
4438983 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 48.0 4.60e-01 96.4% 65.3%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.67 45.0 4.80e-01 79.5% 81.4%
3877485 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 45.0 4.54e-01 96.4% 69.4%
3562174 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 47.0 4.45e-01 97.6% 62.0%
3925803 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 58.0 5.32e-01 97.6% 82.7%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 53.0 5.07e-01 90.4% 78.0%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.24e-01 90.4% 61.1%
3835464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.15e-01 96.4% 94.3%
3474075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.65e-01 74.7% 87.8%
3939982 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.46e-01 96.4% 65.5%
3233511 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 40.0 4.63e-01 75.9% 100.0%
3572647 4.1.1.227 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.61 42.0 4.16e-01 83.1% 66.7%
3797477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.76e-01 80.7% 95.4%
3473924 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.77e-01 79.5% 96.9%
158939 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 4.62e-01 91.6% 82.7%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.62e-01 95.2% 85.0%
3928262 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.67e-01 80.7% 98.3%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.66e-01 79.5% 100.0%
3505437 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 40.0 4.02e-01 80.7% 69.4%
3908665 4.1.1.227 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.58 41.0 3.91e-01 72.3% 65.3%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.58 47.0 4.53e-01 100.0% 77.9%
3784968 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 42.0 4.28e-01 77.1% 83.7%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.58 45.0 4.30e-01 96.4% 71.0%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.58 50.0 4.12e-01 97.6% 72.9%
3507664 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 38.0 4.35e-01 73.5% 95.0%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 37.0 3.76e-01 77.1% 67.5%
3278485 219.1.1.49 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C70 0.57 48.0 3.81e-01 96.4% 89.2%
3191269 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 43.0 4.59e-01 89.2% 95.7%
3174058 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 39.0 4.13e-01 75.9% 81.3%
3388199 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 42.0 3.35e-01 79.5% 70.6%
4013324 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.57e-01 91.6% 97.1%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 39.0 4.02e-01 75.9% 75.0%
3720772 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 41.0 4.43e-01 88.0% 94.3%
3240192 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 39.0 4.05e-01 75.9% 78.7%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 38.0 4.08e-01 77.1% 82.9%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.56 49.0 4.44e-01 97.6% 94.8%
3546762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 40.0 4.29e-01 77.1% 90.0%
3234947 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 38.0 4.15e-01 78.3% 90.8%
3619598 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 37.0 3.76e-01 75.9% 68.2%
3247188 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 41.0 4.28e-01 81.9% 88.0%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 38.0 4.28e-01 80.7% 98.3%
3620934 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 40.0 4.11e-01 78.3% 81.2%
3594576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.80e-01 80.7% 80.0%
3925069 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.55 47.0 4.02e-01 97.6% 77.9%
3723808 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 39.0 4.32e-01 79.5% 98.5%
3627688 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.55 47.0 3.92e-01 97.6% 72.0%
3938484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.00e-01 94.0% 70.8%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.54 47.0 4.19e-01 96.4% 93.0%
3895155 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 4.11e-01 90.4% 83.7%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.17e-01 97.6% 79.1%
3188732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 42.0 4.40e-01 85.5% 96.0%
5018015 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 38.0 3.24e-01 77.1% 68.3%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 41.0 4.03e-01 84.3% 90.0%
3918564 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 39.0 4.07e-01 78.3% 100.0%
3279818 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 38.0 3.28e-01 79.5% 70.1%
4265378 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 44.0 4.11e-01 94.0% 74.8%
4658852 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.51 44.0 3.17e-01 100.0% 61.5%
4978505 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 44.0 3.20e-01 98.8% 80.3%
4640921 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 41.0 4.01e-01 91.6% 79.6%
3388630 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 37.0 3.84e-01 78.3% 98.8%
3218889 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 3.87e-01 95.2% 84.9%
4121236 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 40.0 4.00e-01 92.8% 82.0%