←Back to structures

NC_062749.1__YP_010356955.1__M1M27_gp04__00004

Bact-Vir

NC_062749.1__YP_010356955.1__M1M27_gp04__00004

Identity

Accession:
NC_062749 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Duneviridae› Ingelinevirus› Cellulophaga_phage_Ingeline_1

TaxID: 2745674

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-105
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.75 46.0 5.12e-01 94.3% 78.3%
3nb0B03 6.10.260.10 Special › Helix non-globular › F1FO ATP Synthase › 0.70 45.0 4.96e-01 70.5% 81.0%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.68 56.0 4.23e-01 87.6% 70.7%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 42.0 4.40e-01 87.6% 72.3%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 47.0 4.31e-01 76.2% 79.7%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 3.88e-01 74.3% 83.1%
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 41.0 3.54e-01 70.5% 81.0%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.56 44.0 3.26e-01 83.8% 32.5%
5yuyA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 38.0 3.65e-01 71.4% 69.7%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.54 37.0 3.87e-01 70.5% 79.4%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 37.0 3.54e-01 72.4% 72.1%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 30.0 2.74e-01 84.8% 44.5%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.43e-01 79.0% 94.6%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.85e-01 73.3% 36.1%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 35.0 3.29e-01 70.5% 81.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177612 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.77 42.0 3.98e-01 81.0% 46.4%
4655407 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 50.0 4.26e-01 75.2% 85.3%
4069414 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 49.0 4.15e-01 75.2% 84.1%
3603411 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 48.0 4.38e-01 74.3% 85.2%
4025655 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 42.0 4.46e-01 84.8% 71.6%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 45.0 4.24e-01 85.7% 60.0%
3531638 109.4.1.25 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL 0.64 53.0 3.49e-01 87.6% 79.5%
3710532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 47.0 4.73e-01 76.2% 77.1%
3775826 4016.1.1.0 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase 0.63 48.0 4.27e-01 90.5% 57.2%
4938398 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 44.0 4.00e-01 76.2% 83.4%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 44.0 4.06e-01 94.3% 58.5%
4936526 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 43.0 3.96e-01 75.2% 87.0%
3970671 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 39.0 4.51e-01 87.6% 92.0%
3580090 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.60 45.0 4.12e-01 77.1% 99.2%
4078369 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.60 48.0 3.89e-01 86.7% 64.5%
3396714 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 43.0 3.90e-01 76.2% 80.7%
3594109 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 49.0 4.26e-01 86.7% 63.3%
5069977 304.128.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB › FtsX 0.58 51.0 3.22e-01 97.1% 86.4%
1695454 3517.1.1.1 ↗ a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Flu_PA 0.58 41.0 2.68e-01 74.3% 26.5%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 48.0 4.74e-01 85.7% 100.0%
4880604 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.58 41.0 3.67e-01 76.2% 53.5%
4619002 4177.1.1.66 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › ATG17_like 0.58 52.0 3.66e-01 95.2% 45.0%
3781291 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 42.0 4.38e-01 84.8% 80.0%
5081920 304.160.1.1 ↗ a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF 0.57 45.0 4.13e-01 83.8% 70.4%
3621163 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.57 46.0 3.41e-01 85.7% 67.5%
3614646 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 46.0 4.03e-01 85.7% 64.5%
4359979 3882.1.1.1 ↗ alpha bundles › Atg17 › Atg17 › Atg17 › ATG17_like 0.57 51.0 3.25e-01 95.2% 57.2%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.56 38.0 3.49e-01 70.5% 53.3%
4976823 305.2.1.0 ↗ a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.56 28.0 3.31e-01 94.3% 68.0%
4532543 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 46.0 4.10e-01 84.8% 65.0%
3229643 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 40.0 3.82e-01 74.3% 88.3%
4662222 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 46.0 4.45e-01 88.6% 93.3%
5022380 3755.3.1.632 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.55 44.0 4.01e-01 84.8% 70.7%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 40.0 3.94e-01 88.6% 69.6%
4990636 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 41.0 3.84e-01 86.7% 63.8%
5048161 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 44.0 3.96e-01 84.8% 65.0%
3596821 4268.2.1.0 ↗ alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA 0.54 40.0 3.96e-01 79.0% 72.2%
4140340 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 44.0 3.91e-01 86.7% 66.0%
3457354 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 44.0 3.88e-01 84.8% 73.8%
5079975 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 43.0 3.88e-01 84.8% 62.8%
4983091 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 43.0 3.98e-01 85.7% 83.0%
4661346 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 44.0 3.88e-01 85.7% 74.5%
3394225 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 42.0 4.15e-01 85.7% 78.3%
4410759 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 42.0 4.10e-01 85.7% 82.6%
3617532 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.52 37.0 2.76e-01 71.4% 42.0%
4029228 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 46.0 3.70e-01 94.3% 58.4%
3598110 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.52 38.0 3.17e-01 78.1% 58.9%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 46.0 4.30e-01 96.2% 98.4%
1697857 304.48.1.30 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom 0.50 42.0 2.99e-01 93.3% 81.2%