←Back to structures

NC_062749.1__YP_010356959.1__M1M27_gp08__00008

Bact-Vir

NC_062749.1__YP_010356959.1__M1M27_gp08__00008

Identity

Accession:
NC_062749 ↗
Kingdom:
phage

Quality

58.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Duneviridae› Ingelinevirus› Cellulophaga_phage_Ingeline_1

TaxID: 2745674

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 235-310_440-467
PDB
Domain cluster: rep: NC_055834.1__YP_010106511.1__KNU92_gp121__00019__D308-423_549-580
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 48.0 4.50e-01 90.4% 70.9%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.58 48.0 4.43e-01 89.4% 90.8%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 41.0 4.68e-01 86.5% 100.0%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.56 36.0 3.30e-01 95.2% 50.4%
6qumA04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.56 39.0 3.56e-01 73.1% 82.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 32.0 3.52e-01 95.2% 68.2%
3v9hD01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 38.0 2.68e-01 70.2% 87.2%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 50.0 4.33e-01 100.0% 73.9%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.54 41.0 4.41e-01 91.3% 92.3%
4an8A02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 42.0 4.00e-01 85.6% 95.9%
2hekA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 43.0 3.20e-01 93.3% 42.0%
3r31A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 36.0 2.70e-01 73.1% 47.8%
4fr2A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 40.0 3.30e-01 86.5% 75.4%
1rrmA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.50 40.0 3.26e-01 86.5% 74.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3170239 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 34.0 3.70e-01 90.4% 55.6%
3165030 601.19.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.68 38.0 3.07e-01 95.2% 29.2%
3296440 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 41.0 4.42e-01 73.1% 87.1%
3880738 601.1.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.56 35.0 3.13e-01 94.2% 46.4%
5070804 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.52 36.0 2.98e-01 73.1% 94.9%
4983021 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.51 31.0 2.79e-01 97.1% 41.3%
3597397 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.51 43.0 3.38e-01 90.4% 49.5%
3636338 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.50 32.0 2.99e-01 86.5% 53.6%
D2 medium residues 311-439
PDB
Domain cluster: rep: OQ938586.1__WIC89734.1__SEA_SOJO_16__00016__D252-372
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5al9A01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.61 37.0 3.58e-01 93.8% 52.4%
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.57 36.0 4.27e-01 91.5% 97.6%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 38.0 4.25e-01 72.1% 89.8%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 41.0 3.95e-01 76.0% 90.6%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.56 34.0 3.74e-01 96.9% 73.3%
2mgxA00 1.20.940.10 Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 0.54 38.0 3.87e-01 96.9% 71.8%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.98e-01 84.5% 98.0%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.53 33.0 3.42e-01 100.0% 63.2%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.52 42.0 4.08e-01 87.6% 91.9%
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.51 36.0 3.67e-01 72.1% 83.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.58 46.0 3.61e-01 86.0% 98.6%
4177197 5059.1.1.9 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport 0.57 45.0 3.57e-01 87.6% 98.3%
2758145 4953.1.1.3 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C 0.56 29.0 3.72e-01 96.9% 90.0%
4025852 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 39.0 3.96e-01 96.9% 73.6%
3759368 544.1.1.4 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › PF28319 0.52 37.0 3.99e-01 94.6% 90.5%
3198906 3615.1.1.23 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Mmc1_N 0.51 33.0 3.81e-01 89.9% 93.3%
3815191 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.51 41.0 3.91e-01 90.7% 96.8%
4024773 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.50 37.0 3.45e-01 78.3% 81.8%
3935819 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.50 39.0 3.80e-01 84.5% 96.0%
3420292 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.50 41.0 3.93e-01 89.9% 100.0%
D3 medium residues 784-864
PDB