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NC_062749.1__YP_010356968.1__M1M27_gp17__00017
Bact-VirNC_062749.1__YP_010356968.1__M1M27_gp17__00017
Identity
- Accession:
- NC_062749 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Duneviridae›
Ingelinevirus›
Cellulophaga_phage_Ingeline_1
TaxID: 2745674
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-83
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1au7A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.72 | 56.0 | 5.84e-01 | 83.7% | 93.1% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.68 | 39.0 | 4.07e-01 | 85.0% | 60.8% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 47.0 | 4.52e-01 | 75.0% | 80.2% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 41.0 | 3.80e-01 | 87.5% | 53.5% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.60 | 55.0 | 5.05e-01 | 100.0% | 88.1% |
| 7yugA01 | 1.10.10.2590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain | 0.58 | 36.0 | 3.27e-01 | 81.2% | 44.2% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 49.0 | 4.08e-01 | 92.5% | 84.1% |
| 4hd1A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 47.0 | 3.27e-01 | 90.0% | 27.0% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.56 | 44.0 | 3.56e-01 | 86.3% | 92.6% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.56 | 38.0 | 3.72e-01 | 76.2% | 64.4% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 40.0 | 3.90e-01 | 80.0% | 67.8% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 43.0 | 4.30e-01 | 90.0% | 82.7% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.55 | 38.0 | 3.86e-01 | 87.5% | 72.8% |
| 2o6kA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.55 | 39.0 | 4.03e-01 | 76.2% | 100.0% |
| 4py6C00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 39.0 | 3.42e-01 | 76.2% | 85.0% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 42.0 | 3.97e-01 | 82.5% | 70.8% |
| 2nnwA02 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 44.0 | 3.71e-01 | 87.5% | 86.6% |
| 3m1mA03 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.53 | 38.0 | 3.49e-01 | 77.5% | 59.1% |
| 4ttrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.26e-01 | 95.0% | 46.3% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.51 | 43.0 | 3.53e-01 | 93.8% | 66.4% |
| 1a1wA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 39.0 | 3.89e-01 | 86.3% | 83.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4008764 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.78 | 58.0 | 5.70e-01 | 78.8% | 83.5% |
| 3471028 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.73 | 60.0 | 5.60e-01 | 90.0% | 73.0% |
| 3640777 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 32.0 | 3.55e-01 | 91.3% | 52.3% |
| 3507833 | 604.5.1.10 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › HRG | 0.70 | 49.0 | 4.08e-01 | 72.5% | 89.6% |
| 3613552 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 56.0 | 4.31e-01 | 95.0% | 40.6% |
| 5078343 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.66 | 41.0 | 4.56e-01 | 87.5% | 79.7% |
| 3742678 | 3416.1.1.1 ↗ | a+b complex topology › Mediator co-activator domain 1 of Gal11/med15 › Mediator co-activator domain 1 of Gal11/med15 › Mediator co-activator domain 1 of Gal11/med15 › Gal11_ABD1 | 0.64 | 58.0 | 5.67e-01 | 97.5% | 91.8% |
| 3535889 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.59 | 47.0 | 4.53e-01 | 86.3% | 78.9% |
| 3340292 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.59 | 43.0 | 2.92e-01 | 78.8% | 42.2% |
| 3600731 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.58 | 44.0 | 3.88e-01 | 82.5% | 55.7% |
| 3500243 | 1008.1.1.74 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CC_Cfap43 | 0.57 | 47.0 | 3.82e-01 | 87.5% | 93.6% |
| 4388399 | 102.4.1.1 ↗ | alpha arrays › HhH/H2TH › YozE-like › YozE-like › YozE_SAM_like | 0.56 | 39.0 | 4.04e-01 | 75.0% | 98.7% |
| 3698450 | 611.7.1.17 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › DUF7708 | 0.56 | 48.0 | 3.46e-01 | 93.8% | 64.9% |
| 3888928 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 44.0 | 4.44e-01 | 100.0% | 87.5% |
| 4068922 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.54 | 42.0 | 3.83e-01 | 85.0% | 62.9% |
| 3574087 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 34.0 | 3.19e-01 | 83.7% | 51.5% |
| 3564696 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 45.0 | 4.08e-01 | 90.0% | 81.9% |
| 3378723 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.52 | 34.0 | 3.47e-01 | 70.0% | 66.3% |
| 3406066 | 6076.1.1.0 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme | 0.52 | 38.0 | 3.76e-01 | 87.5% | 72.9% |
| 1695201 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.51 | 41.0 | 3.22e-01 | 86.3% | 73.8% |