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NC_062749.1__YP_010356973.1__M1M27_gp22__00022

Bact-Vir

NC_062749.1__YP_010356973.1__M1M27_gp22__00022

Identity

Accession:
NC_062749 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Duneviridae› Ingelinevirus› Cellulophaga_phage_Ingeline_1

TaxID: 2745674

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-117
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 56.0 3.90e-01 93.9% 54.6%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 5.29e-01 98.5% 90.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.54e-01 98.5% 56.2%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.62 52.0 4.07e-01 93.9% 66.0%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 51.0 4.03e-01 90.9% 62.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.70e-01 95.5% 77.6%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.26e-01 93.9% 80.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 5.25e-01 97.0% 100.0%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.27e-01 93.9% 77.8%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.85e-01 83.3% 96.6%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 54.0 5.14e-01 100.0% 90.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.24e-01 93.9% 83.6%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 48.0 4.00e-01 87.9% 69.6%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 51.0 4.18e-01 98.5% 89.9%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.60 53.0 4.37e-01 98.5% 83.8%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 47.0 4.58e-01 100.0% 78.1%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.79e-01 92.4% 82.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 5.13e-01 100.0% 91.7%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 3.77e-01 100.0% 45.4%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 50.0 3.76e-01 98.5% 84.7%
3mwcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 48.0 3.90e-01 92.4% 91.1%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.36e-01 89.4% 72.1%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.59 46.0 4.44e-01 89.4% 100.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 4.05e-01 92.4% 89.5%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.02e-01 93.9% 80.3%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 43.0 3.45e-01 81.8% 38.6%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 46.0 3.35e-01 90.9% 40.4%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 50.0 3.78e-01 100.0% 40.9%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.62e-01 90.9% 82.5%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.57 45.0 3.33e-01 93.9% 32.0%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.57 48.0 4.24e-01 97.0% 81.0%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.72e-01 93.9% 57.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.57 45.0 3.79e-01 92.4% 75.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 46.0 4.37e-01 100.0% 75.9%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.12e-01 93.9% 80.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 4.00e-01 95.5% 99.1%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 47.0 3.86e-01 100.0% 66.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.18e-01 90.9% 100.0%
3isrA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.55 42.0 3.12e-01 83.3% 86.5%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 3.92e-01 90.9% 78.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 47.0 4.19e-01 100.0% 95.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 48.0 4.59e-01 100.0% 93.7%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.54 43.0 3.39e-01 93.9% 46.4%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.57e-01 92.4% 93.1%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.54 45.0 3.36e-01 100.0% 81.3%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.54 43.0 3.43e-01 92.4% 81.5%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.53 45.0 3.88e-01 100.0% 80.4%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.53 46.0 3.69e-01 98.5% 97.7%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 3.94e-01 100.0% 72.1%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.52 39.0 3.50e-01 86.4% 87.5%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 40.0 4.29e-01 93.9% 96.5%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.78e-01 84.8% 90.5%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 41.0 3.86e-01 95.5% 81.4%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4271087 4.1.1.444 ↗ beta barrels › SH3 › SH3 › SH3 › SplA 0.73 57.0 5.63e-01 93.9% 78.6%
3411714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.21e-01 95.5% 74.3%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 57.0 5.38e-01 100.0% 73.8%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 54.0 5.61e-01 98.5% 95.0%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.58e-01 98.5% 96.7%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.44e-01 98.5% 100.0%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.41e-01 100.0% 95.0%
3890922 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.66 57.0 4.83e-01 93.9% 72.4%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 58.0 5.77e-01 100.0% 94.3%
3713672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 4.82e-01 100.0% 64.3%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 57.0 4.46e-01 100.0% 45.5%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 56.0 5.27e-01 98.5% 80.0%
3976351 219.1.1.40 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like 0.64 58.0 3.90e-01 100.0% 29.4%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 55.0 4.35e-01 100.0% 45.7%
4927385 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 45.0 4.96e-01 93.9% 100.0%
3178261 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 4.34e-01 93.9% 67.2%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 55.0 5.14e-01 100.0% 77.6%
1031048 6127.1.1.1 ↗ beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma 0.63 45.0 4.23e-01 75.8% 79.5%
3564088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.51e-01 93.9% 78.2%
3933782 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 57.0 5.24e-01 100.0% 90.6%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 53.0 5.23e-01 98.5% 90.0%
4890881 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.63 52.0 4.25e-01 93.9% 76.2%
3711631 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.12e-01 93.9% 59.3%
3702239 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 4.14e-01 93.9% 80.0%
3882494 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 4.33e-01 93.9% 68.7%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.62 48.0 4.68e-01 100.0% 76.0%
3615126 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 3.88e-01 93.9% 66.1%
3224815 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 51.0 4.31e-01 93.9% 78.3%
3936730 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.38e-01 93.9% 77.3%
3201878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.14e-01 97.0% 54.3%
3393055 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 4.21e-01 93.9% 78.3%
3744629 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.61 52.0 4.23e-01 95.5% 83.2%
3933292 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 41.0 4.63e-01 81.8% 94.0%
3391330 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.61 51.0 4.20e-01 93.9% 75.0%
3899014 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 49.0 3.41e-01 89.4% 46.2%
3094740 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.60 50.0 3.99e-01 93.9% 73.6%
3591170 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.60 50.0 4.15e-01 93.9% 75.0%
3766449 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 49.0 4.23e-01 93.9% 74.5%
3959465 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.60 52.0 4.16e-01 97.0% 65.4%
3270574 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.60 42.0 4.49e-01 80.3% 87.3%
3495962 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.19e-01 93.9% 76.5%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.10e-01 92.4% 72.0%
3591171 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.60 50.0 3.94e-01 93.9% 72.9%
185792 9.17.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipoprotein YedD › Lipoprotein YedD › YedD 0.60 53.0 4.36e-01 98.5% 83.8%
3398310 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 48.0 4.09e-01 92.4% 80.0%
3597380 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.11e-01 93.9% 79.2%
3470007 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.59 41.0 4.20e-01 80.3% 73.8%
3409707 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.59 49.0 4.11e-01 93.9% 71.4%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.59 47.0 4.80e-01 100.0% 92.3%
3696161 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 42.0 4.45e-01 80.3% 85.0%
3591183 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.43e-01 100.0% 94.3%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 52.0 4.92e-01 100.0% 93.8%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 51.0 4.36e-01 100.0% 61.1%
4025949 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.58 48.0 4.02e-01 97.0% 79.2%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 48.0 4.67e-01 100.0% 84.9%
3601563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 3.89e-01 97.0% 75.7%
3742084 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.58 47.0 3.62e-01 93.9% 49.1%
3508683 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.98e-01 98.5% 84.6%
3494683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.68e-01 100.0% 88.6%
3278636 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 45.0 3.59e-01 92.4% 87.7%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 50.0 4.65e-01 100.0% 87.1%
4030699 6127.1.1.1 ↗ beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma 0.56 39.0 3.66e-01 75.8% 75.6%
3598219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.82e-01 93.9% 79.2%
1759628 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.56 46.0 3.29e-01 98.5% 28.8%
3216165 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.96e-01 93.9% 87.6%
3432858 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.56 45.0 3.62e-01 93.9% 98.6%
3247934 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.56 49.0 4.37e-01 100.0% 71.6%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.55 47.0 4.27e-01 95.5% 87.8%
3407222 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.55 47.0 3.18e-01 95.5% 65.6%
5074619 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 38.0 3.23e-01 74.2% 88.3%
3932819 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 48.0 4.03e-01 100.0% 87.8%
3706884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.79e-01 93.9% 73.6%
3592541 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.00e-01 100.0% 73.8%
3517323 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.54 45.0 3.95e-01 100.0% 78.2%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.52 40.0 3.50e-01 87.9% 79.1%