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NC_062749.1__YP_010356981.1__M1M27_gp30__00030

Bact-Vir

NC_062749.1__YP_010356981.1__M1M27_gp30__00030

Identity

Accession:
NC_062749 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Duneviridae› Ingelinevirus› Cellulophaga_phage_Ingeline_1

TaxID: 2745674

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 173-223
PDB
D2 medium residues 59-149
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.73 40.0 5.10e-01 79.1% 96.1%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 41.0 4.09e-01 76.9% 64.2%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 45.0 4.37e-01 78.0% 68.7%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 43.0 4.05e-01 78.0% 61.1%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 39.0 3.87e-01 78.0% 63.2%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 4.04e-01 78.0% 65.7%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 33.0 3.25e-01 95.6% 53.5%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 38.0 3.37e-01 79.1% 69.1%
4evsA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 38.0 3.12e-01 87.9% 42.1%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.29e-01 70.3% 97.2%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.50 39.0 3.61e-01 84.6% 82.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618546 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 44.0 4.04e-01 78.0% 53.9%
3878288 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 43.0 3.91e-01 78.0% 51.7%
158839 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 45.0 4.01e-01 78.0% 56.3%
3934183 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.59 40.0 3.85e-01 78.0% 61.0%
3697816 2008.1.1.99 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.59 41.0 3.29e-01 73.6% 54.9%
3624184 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 42.0 3.87e-01 76.9% 59.1%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.58 41.0 3.57e-01 76.9% 47.9%
3209621 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 44.0 3.42e-01 91.2% 36.1%
5053120 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.55 46.0 3.05e-01 91.2% 28.4%
3194226 12.6.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C 0.53 27.0 3.29e-01 79.1% 82.0%
3730237 2008.1.1.99 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.52 45.0 3.32e-01 95.6% 56.2%
4014955 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 38.0 3.46e-01 81.3% 79.2%