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NC_062750.1__YP_010357009.1__M1M28_gp08__00008
Bact-VirNC_062750.1__YP_010357009.1__M1M28_gp08__00008
Identity
- Accession:
- NC_062750 ↗
- Kingdom:
- phage
Quality
46.8
mean pLDDT
Taxonomy
TaxID: 2745684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 243-355
Domain cluster:
rep: OQ221560.1__WCS67416.1__PhiCrAssBcn25_35__00035__D171-281
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jlvC00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.69 | 55.0 | 5.85e-01 | 92.0% | 97.9% |
| 4hwvB00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 61.0 | 3.98e-01 | 98.2% | 93.0% |
| 3vmvA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 60.0 | 4.35e-01 | 100.0% | 84.0% |
| 1pxzA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 60.0 | 4.26e-01 | 100.0% | 88.2% |
| 7chuA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 59.0 | 4.15e-01 | 98.2% | 75.0% |
| 2bm5B00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.66 | 60.0 | 5.11e-01 | 100.0% | 83.3% |
| 4rcwA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.65 | 58.0 | 4.63e-01 | 100.0% | 72.6% |
| 2xt2B00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.65 | 58.0 | 4.88e-01 | 100.0% | 80.4% |
| 2w7zA00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.65 | 58.0 | 4.76e-01 | 99.1% | 81.2% |
| 1rwrA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 57.0 | 4.25e-01 | 100.0% | 72.4% |
| 2vjiA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 56.0 | 3.84e-01 | 100.0% | 59.8% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.63 | 55.0 | 4.15e-01 | 99.1% | 69.9% |
| 1vblA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.63 | 55.0 | 3.84e-01 | 100.0% | 74.0% |
| 6kqsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.62 | 55.0 | 3.76e-01 | 100.0% | 66.4% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.61 | 51.0 | 4.43e-01 | 91.2% | 60.5% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 51.0 | 4.61e-01 | 96.5% | 73.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3873509 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.74 | 60.0 | 5.21e-01 | 85.8% | 86.5% |
| 5009518 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 64.0 | 4.07e-01 | 100.0% | 30.9% |
| 3263728 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.69 | 63.0 | 4.93e-01 | 100.0% | 79.6% |
| 3254620 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.69 | 61.0 | 4.22e-01 | 100.0% | 59.5% |
| 3599244 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.67 | 55.0 | 4.76e-01 | 88.5% | 58.2% |
| 3941286 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.67 | 60.0 | 4.68e-01 | 100.0% | 72.2% |
| 3335697 | 207.2.1.3 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 | 0.67 | 60.0 | 4.35e-01 | 100.0% | 91.6% |
| 3269404 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.67 | 60.0 | 4.00e-01 | 100.0% | 50.0% |
| 4981765 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.67 | 60.0 | 4.31e-01 | 99.1% | 73.8% |
| 4014339 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 60.0 | 4.45e-01 | 100.0% | 87.9% |
| 4856183 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.66 | 59.0 | 4.21e-01 | 99.1% | 68.9% |
| 3591751 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 59.0 | 4.65e-01 | 99.1% | 76.6% |
| 4969618 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.65 | 58.0 | 4.69e-01 | 100.0% | 87.1% |
| 4527010 | 207.9.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 | 0.65 | 58.0 | 4.99e-01 | 100.0% | 83.9% |
| 3383785 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.64 | 57.0 | 3.91e-01 | 100.0% | 42.9% |
| 5033178 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.64 | 57.0 | 4.30e-01 | 100.0% | 70.9% |
| 3382487 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.63 | 56.0 | 4.01e-01 | 100.0% | 91.9% |
| 5034080 | 207.2.2.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin | 0.62 | 50.0 | 5.12e-01 | 86.7% | 99.1% |
| 3716374 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.61 | 55.0 | 4.43e-01 | 100.0% | 53.8% |
| 3592664 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.61 | 49.0 | 4.28e-01 | 87.6% | 86.9% |
| 4448399 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.60 | 49.0 | 3.74e-01 | 89.4% | 87.1% |
| 3286791 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.60 | 51.0 | 5.21e-01 | 98.2% | 97.3% |
| 4562874 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.59 | 47.0 | 3.68e-01 | 86.7% | 97.6% |
| 3503258 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.59 | 49.0 | 4.70e-01 | 90.3% | 89.1% |
| 3844607 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.57 | 50.0 | 3.57e-01 | 97.3% | 64.9% |
| 4498099 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.57 | 48.0 | 3.74e-01 | 92.9% | 83.1% |
| 3259691 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.55 | 48.0 | 3.96e-01 | 99.1% | 62.0% |
D2
medium
residues 356-495
D3
medium
residues 496-600
D4
medium
residues 755-810
D5
medium
residues 811-889
D6
medium
residues 890-979