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NC_062751.1__YP_010357110.1__M1M29_gp061__00061

Bact-Vir

NC_062751.1__YP_010357110.1__M1M29_gp061__00061

Identity

Accession:
NC_062751 ↗
Kingdom:
phage

Quality

63.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Molycolviridae› Mollyvirus› Maribacter_phage_Molly_1

TaxID: 2745685

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 872-970
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 35.9 1.00e-08 50.5% 100.0%
D2 medium residues 1-82
PDB
D3 medium residues 235-302
PDB
D4 medium residues 533-598
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.85 61.0 6.31e-01 87.9% 80.3%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.70 56.0 4.67e-01 100.0% 49.2%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.70 46.0 3.84e-01 75.8% 40.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.67 58.0 4.34e-01 95.5% 60.4%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.65 55.0 4.00e-01 98.5% 51.0%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 46.0 3.44e-01 84.8% 48.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.57 44.0 3.67e-01 86.4% 74.6%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.56 48.0 4.02e-01 100.0% 65.6%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.13e-01 72.7% 45.0%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 47.0 3.54e-01 98.5% 87.4%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.83e-01 98.5% 96.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.72e-01 95.5% 48.9%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 44.0 3.04e-01 97.0% 47.9%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.59e-01 98.5% 68.7%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.67e-01 97.0% 51.1%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.38e-01 100.0% 45.9%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.19e-01 100.0% 77.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185629 79.1.1.8 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › gp37_trimer 0.72 62.0 5.40e-01 90.9% 64.9%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 56.0 5.02e-01 100.0% 61.1%
3916950 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.70 56.0 3.70e-01 100.0% 20.7%
3536576 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.69 55.0 5.07e-01 100.0% 68.2%
3420606 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.68 49.0 3.08e-01 77.3% 38.4%
2581425 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 49.0 5.34e-01 89.4% 94.5%
3600949 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.67 59.0 4.67e-01 100.0% 52.6%
4336238 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.63 42.0 3.68e-01 75.8% 45.0%
2582102 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.62 54.0 4.41e-01 100.0% 51.2%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.61 53.0 4.25e-01 98.5% 48.1%
4638995 71.1.1.15 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.58 51.0 3.66e-01 98.5% 34.0%
4471281 10.1.1.89 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 0.58 51.0 3.54e-01 100.0% 35.7%
4681650 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.57 49.0 3.68e-01 98.5% 37.1%
4030047 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.97e-01 97.0% 30.3%
4960303 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 46.0 4.09e-01 93.9% 87.4%
3212817 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.54 37.0 2.99e-01 74.2% 34.7%
1063623 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 45.0 3.60e-01 95.5% 62.6%
1695233 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.53 44.0 3.45e-01 97.0% 81.9%