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NC_062751.1__YP_010357203.1__M1M29_gp154__00154

Bact-Vir

NC_062751.1__YP_010357203.1__M1M29_gp154__00154

Identity

Accession:
NC_062751 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Molycolviridae› Mollyvirus› Maribacter_phage_Molly_1

TaxID: 2745685

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-118
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 62.0 7.04e-01 96.3% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 64.0 7.08e-01 100.0% 98.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 62.0 7.01e-01 97.5% 100.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 58.0 6.42e-01 100.0% 95.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 60.0 6.47e-01 100.0% 95.7%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 45.0 4.79e-01 92.6% 87.1%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 53.0 4.33e-01 91.4% 54.1%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 53.0 4.28e-01 91.4% 98.6%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.61 43.0 4.82e-01 88.9% 95.2%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 53.0 4.33e-01 96.3% 57.6%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 49.0 4.08e-01 90.1% 87.9%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 51.0 4.04e-01 95.1% 76.1%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 50.0 3.97e-01 95.1% 74.7%
1e7uA04 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.58 48.0 3.95e-01 95.1% 91.8%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 50.0 3.95e-01 96.3% 75.9%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 34.0 3.95e-01 75.3% 92.2%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.33e-01 90.1% 81.9%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 4.00e-01 91.4% 81.8%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.18e-01 96.3% 25.8%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 48.0 4.85e-01 91.4% 93.7%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 47.0 3.89e-01 95.1% 82.0%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 3.49e-01 84.0% 78.1%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 3.43e-01 84.0% 74.7%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.51e-01 84.0% 77.4%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 4.48e-01 88.9% 85.2%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.55 44.0 3.63e-01 88.9% 66.9%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 4.02e-01 91.4% 86.0%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 46.0 3.77e-01 91.4% 96.0%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 34.0 3.91e-01 82.7% 89.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 33.0 3.82e-01 76.5% 92.3%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 46.0 3.82e-01 97.5% 88.4%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.54 44.0 2.69e-01 91.4% 15.8%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.59e-01 77.8% 91.7%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.24e-01 84.0% 67.6%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.36e-01 91.4% 74.9%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.53 44.0 3.98e-01 91.4% 89.9%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.32e-01 84.0% 78.3%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 44.0 3.48e-01 97.5% 84.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 32.0 3.50e-01 80.2% 78.1%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 43.0 3.48e-01 93.8% 98.2%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 40.0 3.46e-01 85.2% 69.8%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.70e-01 95.1% 75.4%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.51 43.0 3.73e-01 100.0% 74.3%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.22e-01 84.0% 75.2%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.86e-01 96.3% 27.9%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 41.0 2.68e-01 91.4% 97.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.87 67.0 7.47e-01 100.0% 100.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 66.0 7.39e-01 100.0% 100.0%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 64.0 7.11e-01 97.5% 96.9%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.85 64.0 7.15e-01 98.8% 98.5%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 63.0 6.99e-01 97.5% 96.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 65.0 7.26e-01 97.5% 100.0%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 63.0 6.98e-01 97.5% 96.9%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 65.0 7.17e-01 100.0% 100.0%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 64.0 7.08e-01 100.0% 98.5%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 63.0 7.02e-01 98.8% 98.5%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 64.0 7.10e-01 100.0% 100.0%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.83 63.0 7.01e-01 98.8% 98.5%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.83 63.0 7.07e-01 96.3% 98.5%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.83 64.0 7.03e-01 100.0% 100.0%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 6.55e-01 100.0% 92.9%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 59.0 5.47e-01 96.3% 98.0%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.66 60.0 5.38e-01 98.8% 88.2%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 53.0 3.50e-01 88.9% 38.2%
3725498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.48e-01 97.5% 97.1%
4022153 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.63 57.0 4.65e-01 98.8% 61.4%
None — 0.62 56.0 4.38e-01 98.8% 61.8%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 48.0 3.93e-01 95.1% 46.2%
3164580 2.1.1.85 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.61 45.0 4.00e-01 77.8% 70.4%
3422227 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 54.0 3.58e-01 96.3% 25.8%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.81e-01 92.6% 91.0%
3402635 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 44.0 3.71e-01 76.5% 71.1%
3313137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 53.0 4.24e-01 96.3% 51.2%
3202278 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 48.0 3.74e-01 85.2% 57.6%
3424637 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.60 52.0 4.99e-01 98.8% 98.9%
3386820 2.1.1.85 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.59 43.0 3.86e-01 75.3% 68.5%
3410266 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.59 50.0 4.06e-01 91.4% 64.1%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 48.0 3.71e-01 95.1% 61.6%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.16e-01 95.1% 58.5%
3819824 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 44.0 3.16e-01 96.3% 27.1%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.56 49.0 4.07e-01 95.1% 55.8%
4981490 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.56 43.0 3.42e-01 84.0% 70.3%
3330137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 48.0 3.88e-01 96.3% 65.0%
1844144 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.56 43.0 3.46e-01 84.0% 75.8%
3214741 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 46.0 4.48e-01 90.1% 95.6%
3612786 243.1.1.100 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26533 0.55 46.0 3.87e-01 92.6% 80.7%
3633543 206.1.1.78 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.54 45.0 2.89e-01 91.4% 24.4%
3186866 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 45.0 3.31e-01 95.1% 51.5%
3576152 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.54 43.0 2.88e-01 85.2% 26.2%
3903475 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 42.0 3.28e-01 87.7% 78.4%
3246120 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 42.0 3.20e-01 87.7% 69.3%
3639629 4.1.1.312 ↗ beta barrels › SH3 › SH3 › SH3 › Med13_N 0.52 45.0 3.65e-01 100.0% 64.8%
3275652 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 42.0 3.14e-01 91.4% 80.5%
3687614 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 37.0 3.64e-01 90.1% 70.0%
4026465 5.1.4.338 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28639 0.51 41.0 2.60e-01 88.9% 22.5%
5065094 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 37.0 3.24e-01 79.0% 64.8%