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NC_062751.1__YP_010357248.1__M1M29_gp199__00199
Bact-VirNC_062751.1__YP_010357248.1__M1M29_gp199__00199
Identity
- Accession:
- NC_062751 ↗
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Taxonomy
TaxID: 2745685
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i5sA01 | 1.10.8.500 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase | 0.76 | 57.0 | 5.31e-01 | 78.2% | 92.3% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.64 | 54.0 | 4.47e-01 | 98.2% | 78.4% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.63 | 56.0 | 3.47e-01 | 100.0% | 46.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 43.0 | 4.20e-01 | 78.2% | 67.7% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.57 | 46.0 | 4.59e-01 | 94.5% | 93.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4525341 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.82 | 61.0 | 5.53e-01 | 83.6% | 61.4% |
| 3784786 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.79 | 56.0 | 5.35e-01 | 76.4% | 69.2% |
| 4011410 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.76 | 61.0 | 5.28e-01 | 96.4% | 56.5% |
| 3785494 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.76 | 55.0 | 4.91e-01 | 74.5% | 60.0% |
| 3725506 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 62.0 | 4.91e-01 | 100.0% | 46.4% |
| 4976863 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.65 | 46.0 | 2.97e-01 | 83.6% | 14.6% |
| 4941755 | 101.18.1.0 ↗ | alpha arrays › HTH › DNA-binding domain of TraM protein › DNA-binding domain of TraM protein | 0.60 | 44.0 | 3.97e-01 | 83.6% | 57.6% |