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NC_062752.1__YP_010357316.1__M1M30_gp067__00067
Bact-VirNC_062752.1__YP_010357316.1__M1M30_gp067__00067
Identity
- Accession:
- NC_062752 ↗
- Kingdom:
- phage
Quality
52.7
mean pLDDT
Taxonomy
TaxID: 2745691
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-86
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 58.0 | 5.68e-01 | 93.2% | 100.0% |
| 2hpiA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.70 | 58.0 | 5.90e-01 | 97.3% | 94.4% |
| 3kzqA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 58.0 | 4.15e-01 | 98.6% | 33.0% |
| 2hnhA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.67 | 58.0 | 5.68e-01 | 98.6% | 89.7% |
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 52.0 | 4.07e-01 | 83.6% | 81.0% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 50.0 | 4.01e-01 | 80.8% | 91.9% |
| 2hi0A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 55.0 | 5.17e-01 | 91.8% | 93.3% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.65 | 54.0 | 4.15e-01 | 90.4% | 77.4% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.65 | 53.0 | 5.06e-01 | 91.8% | 86.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.64 | 53.0 | 5.17e-01 | 93.2% | 96.3% |
| 2rp5A00 | 1.10.150.830 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 53.0 | 4.56e-01 | 94.5% | 59.0% |
| 4jrrB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 53.0 | 4.06e-01 | 98.6% | 39.7% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.61 | 41.0 | 3.86e-01 | 82.2% | 56.2% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 46.0 | 4.36e-01 | 82.2% | 81.8% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 48.0 | 4.14e-01 | 87.7% | 93.0% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.60 | 49.0 | 4.83e-01 | 94.5% | 88.7% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 43.0 | 3.76e-01 | 79.5% | 83.3% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.59 | 46.0 | 4.54e-01 | 83.6% | 96.2% |
| 1vbiA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.59 | 47.0 | 4.23e-01 | 87.7% | 93.2% |
| 6bmeA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 48.0 | 4.06e-01 | 93.2% | 65.4% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 37.0 | 4.13e-01 | 75.3% | 95.8% |
| 3wa8B00 | 1.10.520.40 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 | 0.58 | 43.0 | 3.37e-01 | 82.2% | 77.1% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.57 | 45.0 | 4.41e-01 | 84.9% | 92.3% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 37.0 | 4.03e-01 | 72.6% | 87.3% |
| 3kheA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 44.0 | 3.89e-01 | 83.6% | 83.2% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.57 | 41.0 | 3.63e-01 | 76.7% | 84.9% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.56 | 43.0 | 4.25e-01 | 86.3% | 91.4% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 41.0 | 4.15e-01 | 82.2% | 97.2% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 43.0 | 3.81e-01 | 90.4% | 79.1% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 40.0 | 3.15e-01 | 84.9% | 38.0% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 38.0 | 2.50e-01 | 75.3% | 33.3% |
| 2rreA00 | 1.10.10.2010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 39.0 | 3.88e-01 | 80.8% | 86.5% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 41.0 | 3.25e-01 | 100.0% | 65.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4238328 | 106.1.1.3 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Bac_globin | 0.79 | 58.0 | 4.93e-01 | 78.1% | 95.8% |
| 3414131 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.70 | 44.0 | 4.14e-01 | 89.0% | 52.2% |
| 3476194 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.69 | 57.0 | 3.45e-01 | 93.2% | 15.6% |
| 1143835 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.69 | 53.0 | 3.60e-01 | 83.6% | 72.1% |
| 4991188 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.68 | 59.0 | 3.80e-01 | 95.9% | 30.4% |
| 4413254 | 2485.1.1.10 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA | 0.68 | 55.0 | 4.11e-01 | 98.6% | 34.9% |
| 4928310 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.68 | 55.0 | 5.12e-01 | 91.8% | 89.2% |
| 4257906 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.66 | 53.0 | 4.96e-01 | 89.0% | 78.9% |
| 4312875 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.64 | 54.0 | 5.03e-01 | 95.9% | 82.1% |
| 3213449 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.64 | 50.0 | 5.09e-01 | 87.7% | 91.4% |
| 3914757 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.64 | 54.0 | 5.53e-01 | 95.9% | 100.0% |
| 5044421 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.64 | 51.0 | 4.99e-01 | 89.0% | 91.3% |
| 4520559 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.64 | 53.0 | 5.06e-01 | 93.2% | 91.8% |
| 143247 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.63 | 52.0 | 5.06e-01 | 93.2% | 98.8% |
| 4180990 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 49.0 | 4.82e-01 | 89.0% | 92.5% |
| 3741476 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.60 | 44.0 | 4.02e-01 | 78.1% | 80.0% |
| 4216456 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 41.0 | 4.05e-01 | 72.6% | 68.8% |
| 3225250 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.59 | 47.0 | 4.68e-01 | 87.7% | 93.3% |
| 4945181 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.58 | 44.0 | 3.72e-01 | 83.6% | 86.2% |
| 3939302 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.56 | 41.0 | 2.57e-01 | 79.5% | 33.0% |
| 4995193 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.54 | 41.0 | 3.19e-01 | 94.5% | 39.3% |
| 4499385 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.54 | 40.0 | 3.17e-01 | 83.6% | 49.4% |
| 3578072 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.54 | 39.0 | 3.63e-01 | 90.4% | 59.0% |
| 3250877 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.52e-01 | 86.3% | 70.4% |
| 3386319 | 503.1.1.0 ↗ | extended segments › N-terminal domain of bifunctional PutA protein › N-terminal domain of bifunctional PutA protein › N-terminal domain of bifunctional PutA protein | 0.53 | 40.0 | 3.61e-01 | 80.8% | 80.0% |
D2
medium
residues 120-194