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NC_062752.1__YP_010357335.1__M1M30_gp086__00086

Bact-Vir

NC_062752.1__YP_010357335.1__M1M30_gp086__00086

Identity

Accession:
NC_062752 ↗
Kingdom:
phage

Quality

51.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 331-368_392-443
PDB
D2 medium residues 475-525_623-685
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 60.0 5.80e-01 99.1% 100.0%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.59 51.0 4.41e-01 95.6% 72.1%
4giwB00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.57 36.0 3.15e-01 95.6% 41.2%
2eh3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 34.0 3.35e-01 78.9% 59.0%
1d2tA00 1.20.144.10 Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase 0.53 39.0 3.20e-01 78.1% 77.9%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.51 41.0 3.75e-01 86.0% 82.7%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 37.0 3.36e-01 75.4% 72.7%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.50 39.0 3.39e-01 83.3% 67.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202405 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.77 70.0 5.87e-01 97.4% 90.8%
3853197 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 50.0 4.34e-01 100.0% 91.6%
3239156 5001.1.1.45 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sra 0.55 46.0 3.39e-01 93.0% 75.6%
3413074 109.4.1.2275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LMBR1 0.55 41.0 2.92e-01 79.8% 91.8%
3932332 1075.1.1.4 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.53 44.0 3.24e-01 91.2% 61.6%
3228857 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 41.0 3.02e-01 91.2% 75.1%
3840020 5073.1.2.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.51 41.0 3.31e-01 89.5% 75.7%
4082939 5001.1.1.45 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sra 0.50 42.0 3.20e-01 94.7% 78.4%
D3 medium residues 526-622
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cjlA02 3.30.20.10 Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 0.74 46.0 5.75e-01 99.0% 100.0%
1wvuB02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 47.0 3.64e-01 100.0% 32.1%
2z39A02 3.30.20.10 Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 0.72 43.0 5.55e-01 99.0% 100.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1147708 235.1.1.2 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.83 78.0 5.92e-01 100.0% 48.1%
4821783 235.1.1.2 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.83 78.0 6.12e-01 100.0% 53.0%
3973873 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.81 76.0 5.78e-01 100.0% 46.4%
3497229 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 40.0 2.78e-01 86.6% 40.6%