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NC_062752.1__YP_010357393.1__M1M30_gp144__00144

Bact-Vir

NC_062752.1__YP_010357393.1__M1M30_gp144__00144

Identity

Accession:
NC_062752 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Molycolviridae› Mollyvirus› Maribacter_phage_Colly_1

TaxID: 2745691

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70
PDB
Domain cluster: rep: Salt_Pond_R1_A_D2_MG_scaffold_27_prodigal-single.1__X__X__00188__D6-63
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 6.03e-01 100.0% 94.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 5.59e-01 100.0% 95.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.71 53.0 5.35e-01 100.0% 81.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.02e-01 100.0% 68.1%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.68 59.0 4.43e-01 100.0% 64.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.49e-01 98.3% 80.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 60.0 5.82e-01 100.0% 98.5%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.36e-01 100.0% 50.0%
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 42.0 3.51e-01 76.7% 39.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 50.0 4.84e-01 100.0% 79.1%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.62 56.0 5.32e-01 100.0% 91.3%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 4.95e-01 100.0% 90.0%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.61 44.0 4.23e-01 100.0% 66.2%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.58 50.0 3.95e-01 100.0% 58.2%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.71e-01 100.0% 84.8%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 49.0 4.03e-01 100.0% 50.9%
4rg8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.57 48.0 3.80e-01 100.0% 61.4%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 45.0 3.29e-01 100.0% 29.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 3.76e-01 93.3% 75.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.59e-01 100.0% 80.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 61.0 5.74e-01 100.0% 67.1%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.79 60.0 5.74e-01 100.0% 70.0%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 56.0 4.82e-01 100.0% 52.2%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.70 54.0 5.30e-01 98.3% 76.9%
4032729 4.1.1.168 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2187 0.70 53.0 5.46e-01 100.0% 84.5%
3965064 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.69 63.0 4.90e-01 100.0% 67.2%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 6.13e-01 100.0% 95.0%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.69 53.0 4.86e-01 100.0% 62.5%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 61.0 5.82e-01 100.0% 82.9%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 60.0 5.27e-01 100.0% 67.1%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.68 57.0 4.78e-01 100.0% 55.0%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 61.0 5.68e-01 100.0% 82.7%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 59.0 5.37e-01 100.0% 72.5%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 61.0 4.28e-01 100.0% 72.0%
3503332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.90e-01 98.3% 98.5%
3608011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 61.0 4.78e-01 100.0% 60.0%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 57.0 4.45e-01 100.0% 44.6%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 58.0 4.86e-01 100.0% 58.0%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 60.0 5.26e-01 100.0% 75.3%
3713672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 4.72e-01 100.0% 58.3%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 57.0 4.27e-01 100.0% 40.0%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 59.0 5.33e-01 100.0% 78.5%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 57.0 5.32e-01 100.0% 88.0%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.65 58.0 4.81e-01 100.0% 62.9%
3270256 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 54.0 5.53e-01 100.0% 94.9%
4026193 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 59.0 5.18e-01 100.0% 91.8%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.93e-01 100.0% 85.0%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.63 56.0 5.13e-01 100.0% 81.2%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 57.0 4.66e-01 100.0% 63.8%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 56.0 5.22e-01 100.0% 80.0%
None — 0.62 56.0 3.54e-01 100.0% 23.4%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 55.0 5.28e-01 100.0% 95.7%
4044377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 3.12e-01 100.0% 17.0%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.84e-01 100.0% 75.0%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 52.0 4.78e-01 100.0% 73.8%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 54.0 5.31e-01 100.0% 95.4%
4398865 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 54.0 4.63e-01 100.0% 84.2%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 49.0 4.06e-01 100.0% 49.6%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 52.0 4.68e-01 100.0% 70.6%
3974654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.71e-01 100.0% 71.2%
3941573 4.1.1.413 ↗ beta barrels › SH3 › SH3 › SH3 › Exonuc_X-T_C 0.59 51.0 3.99e-01 100.0% 60.0%
3597002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.11e-01 100.0% 52.7%
3398379 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 4.08e-01 100.0% 70.0%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.58 50.0 4.80e-01 100.0% 85.7%
1501363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 2.92e-01 100.0% 18.4%
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.84e-01 98.3% 81.9%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 44.0 4.00e-01 100.0% 68.2%
3210555 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 42.0 2.72e-01 100.0% 22.5%
3992986 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.51 45.0 4.20e-01 100.0% 96.0%
5059227 206.1.3.41 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.50 39.0 2.64e-01 86.7% 50.4%