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NC_062752.1__YP_010357410.1__M1M30_gp161__00161

Bact-Vir

NC_062752.1__YP_010357410.1__M1M30_gp161__00161

Identity

Accession:
NC_062752 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Molycolviridae› Mollyvirus› Maribacter_phage_Colly_1

TaxID: 2745691

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 41.0 4.76e-01 98.8% 80.7%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 46.0 4.96e-01 83.7% 81.8%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 47.0 5.05e-01 83.7% 84.8%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 44.0 4.59e-01 83.7% 72.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 46.0 4.96e-01 85.0% 85.1%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 44.0 4.78e-01 81.2% 85.9%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 4.87e-01 83.7% 89.4%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.03e-01 100.0% 95.5%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.41e-01 100.0% 73.8%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.65e-01 100.0% 81.9%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.92e-01 100.0% 94.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.92e-01 100.0% 87.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 39.0 4.25e-01 98.8% 82.3%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.61 53.0 4.88e-01 97.5% 92.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.78e-01 98.8% 94.5%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 5.01e-01 98.8% 89.6%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 43.0 3.82e-01 86.3% 52.1%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.84e-01 98.8% 89.0%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.42e-01 100.0% 74.5%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 44.0 4.29e-01 83.7% 72.1%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.59 44.0 4.28e-01 85.0% 69.2%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.63e-01 100.0% 85.5%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.21e-01 97.5% 63.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.90e-01 98.8% 86.9%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.50e-01 100.0% 84.8%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.59 44.0 4.22e-01 85.0% 68.5%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.77e-01 100.0% 92.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.96e-01 97.5% 96.6%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.58 42.0 4.14e-01 83.7% 72.1%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.56 41.0 3.98e-01 85.0% 70.1%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.42e-01 98.8% 93.5%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.58e-01 98.8% 87.3%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.72e-01 98.8% 84.9%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.18e-01 100.0% 90.1%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.27e-01 100.0% 86.1%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.52 38.0 3.52e-01 78.8% 73.8%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 3.44e-01 75.0% 98.0%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.87e-01 90.0% 88.7%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 36.0 3.41e-01 86.3% 60.2%
4d8mA03 2.100.10.40 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › 0.51 44.0 3.39e-01 100.0% 69.3%
1q9uA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.50 35.0 3.07e-01 72.5% 98.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 47.0 5.40e-01 70.0% 91.7%
3250427 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 62.0 5.53e-01 95.0% 86.4%
3890480 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 49.0 5.03e-01 83.7% 80.0%
3416407 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 59.0 4.54e-01 97.5% 77.8%
3596826 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 57.0 5.36e-01 96.2% 99.0%
1032344 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 46.0 4.58e-01 83.7% 71.6%
5039029 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 50.0 4.85e-01 100.0% 73.3%
4930436 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.64 56.0 5.03e-01 100.0% 90.4%
3217617 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 56.0 4.83e-01 98.8% 93.6%
4956582 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.74e-01 100.0% 92.0%
3716892 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 55.0 4.79e-01 100.0% 89.4%
4931409 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.65e-01 100.0% 92.3%
3709315 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.71e-01 97.5% 76.7%
3759420 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 55.0 4.81e-01 100.0% 92.5%
3786286 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.61 54.0 4.26e-01 100.0% 71.2%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 54.0 4.72e-01 98.8% 92.5%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 53.0 4.55e-01 100.0% 72.6%
4002416 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 54.0 4.34e-01 100.0% 66.3%
3273237 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.61 54.0 4.68e-01 100.0% 76.8%
3615163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 55.0 4.99e-01 100.0% 81.3%
3796013 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.61 53.0 4.58e-01 100.0% 98.5%
5058109 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 45.0 4.34e-01 78.8% 88.9%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 53.0 4.57e-01 98.8% 81.9%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.60 45.0 2.86e-01 78.8% 92.7%
3311131 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 53.0 4.12e-01 100.0% 59.0%
3275683 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 53.0 4.39e-01 100.0% 70.3%
3479736 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 54.0 4.83e-01 98.8% 84.4%
3643995 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 52.0 4.26e-01 100.0% 69.0%
3275758 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 48.0 2.96e-01 88.7% 98.6%
2066757 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.59 44.0 4.18e-01 85.0% 67.0%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 53.0 5.20e-01 100.0% 92.0%
3629277 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.58 49.0 3.10e-01 92.5% 99.8%
3264331 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.57e-01 100.0% 82.7%
3913314 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.58 51.0 4.50e-01 100.0% 91.7%
5074664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.21e-01 100.0% 67.9%
4982481 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 40.0 3.78e-01 87.5% 63.2%
3784710 5.1.5.213 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.55 43.0 2.69e-01 86.3% 86.2%
2068802 304.107.1.0 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.53 41.0 3.66e-01 87.5% 57.9%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 40.0 3.70e-01 85.0% 83.3%
3485043 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 40.0 2.90e-01 85.0% 97.1%
3666655 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 46.0 3.96e-01 97.5% 88.0%
4142345 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.52 39.0 2.50e-01 78.8% 91.3%
3742243 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.56e-01 87.5% 71.2%
3197280 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.58e-01 91.3% 19.1%
4459672 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.50 43.0 3.57e-01 98.8% 80.0%
3955329 304.107.1.0 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.50 43.0 3.03e-01 97.5% 53.3%
D2 high residues 87-128
PDB