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NC_062752.1__YP_010357429.1__M1M30_gp180__00180

Bact-Vir

NC_062752.1__YP_010357429.1__M1M30_gp180__00180

Identity

Accession:
NC_062752 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Molycolviridae› Mollyvirus› Maribacter_phage_Colly_1

TaxID: 2745691

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-154
PDB
Domain cluster: rep: MT028491.1__QIG66049.1__phiOC_p407__00383__D25-155
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13563.13 best 2_5_RNA_ligase2 32.0 1.70e-07 84.6% 78.3%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.79 74.0 6.70e-01 100.0% 89.8%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.74 69.0 6.32e-01 100.0% 84.0%
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.71 65.0 6.15e-01 100.0% 86.5%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.70 64.0 6.07e-01 100.0% 89.2%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.62 55.0 4.86e-01 97.2% 95.2%
1b4bA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 24.0 3.24e-01 86.0% 81.7%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.51 27.0 3.28e-01 80.4% 78.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3339513 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.76 71.0 6.58e-01 100.0% 90.3%
5011802 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.76 71.0 6.20e-01 100.0% 76.1%
4972305 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.75 70.0 6.47e-01 100.0% 85.4%
4982807 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.75 70.0 6.35e-01 100.0% 88.1%
1549209 264.1.1.2 ↗ beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A 0.74 61.0 6.13e-01 100.0% 86.1%
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.74 68.0 6.36e-01 100.0% 90.3%
4020982 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.74 67.0 5.47e-01 100.0% 70.1%
4965442 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 68.0 6.58e-01 100.0% 91.3%
4453123 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 67.0 6.24e-01 100.0% 85.0%
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 68.0 6.27e-01 100.0% 84.4%
5029239 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 68.0 6.26e-01 100.0% 88.2%
4942504 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 67.0 6.13e-01 100.0% 84.2%
5028063 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 67.0 6.25e-01 100.0% 82.3%
4968059 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 66.0 6.11e-01 100.0% 85.6%
3250014 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 53.0 5.42e-01 78.3% 92.1%
3531648 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.71 64.0 5.97e-01 100.0% 90.6%
4046553 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 65.0 6.11e-01 100.0% 85.3%
5058094 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.71 65.0 6.05e-01 100.0% 84.6%
None — 0.70 64.0 6.04e-01 100.0% 88.2%
4019568 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.70 64.0 5.80e-01 100.0% 90.5%
4957217 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.69 63.0 5.86e-01 100.0% 85.0%
3205096 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.69 63.0 5.79e-01 100.0% 88.6%
4031839 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.69 63.0 5.96e-01 100.0% 85.8%
4603837 264.1.1.15 ↗ beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 0.68 62.0 5.44e-01 100.0% 85.6%
5024124 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.58 27.0 3.48e-01 90.2% 75.0%
4409092 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 26.0 3.26e-01 89.5% 65.9%
3597930 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 28.0 3.39e-01 90.9% 70.0%
5021953 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 38.0 4.13e-01 96.5% 93.0%
3210551 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.52 27.0 3.24e-01 88.8% 75.6%