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NC_062752.1__YP_010357434.1__M1M30_gp185__00185
Bact-VirNC_062752.1__YP_010357434.1__M1M30_gp185__00185
Identity
- Accession:
- NC_062752 ↗
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Taxonomy
TaxID: 2745691
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xyiU00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 49.0 | 4.39e-01 | 96.8% | 100.0% |
| 2av5A00 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.58 | 47.0 | 3.95e-01 | 88.9% | 99.1% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 47.0 | 4.18e-01 | 98.4% | 100.0% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.57 | 47.0 | 4.41e-01 | 100.0% | 98.8% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 48.0 | 4.41e-01 | 100.0% | 100.0% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 43.0 | 3.85e-01 | 93.7% | 100.0% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.54 | 42.0 | 4.26e-01 | 100.0% | 87.3% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.53 | 45.0 | 3.31e-01 | 98.4% | 90.8% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.53 | 49.0 | 3.70e-01 | 100.0% | 46.4% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 45.0 | 4.11e-01 | 96.8% | 97.6% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.36e-01 | 100.0% | 45.6% |
| 4ye5A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 44.0 | 3.18e-01 | 100.0% | 52.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033585 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.65 | 56.0 | 4.31e-01 | 100.0% | 68.2% |
| 4019457 | 213.1.1.77 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_7 | 0.63 | 47.0 | 3.33e-01 | 82.5% | 48.6% |
| 3177289 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.60 | 51.0 | 3.88e-01 | 100.0% | 57.0% |
| 3741870 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.59 | 49.0 | 3.72e-01 | 98.4% | 53.5% |
| 3175048 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.58 | 49.0 | 3.73e-01 | 100.0% | 56.6% |
| 3785573 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 49.0 | 4.10e-01 | 100.0% | 52.5% |
| 4510690 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.58 | 49.0 | 4.90e-01 | 96.8% | 100.0% |
| 5060116 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 45.0 | 4.00e-01 | 100.0% | 56.2% |
| 159110 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.57 | 47.0 | 4.41e-01 | 100.0% | 98.8% |
| 3233871 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.57 | 48.0 | 3.61e-01 | 100.0% | 52.6% |
| 3839919 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.55 | 42.0 | 2.94e-01 | 85.7% | 89.0% |
| 3524373 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.54 | 45.0 | 3.63e-01 | 100.0% | 61.4% |
| 3268685 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.54 | 43.0 | 3.30e-01 | 90.5% | 53.5% |
| 5058931 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.53 | 44.0 | 3.85e-01 | 95.2% | 97.0% |
| 3488713 | 221.17.1.2 ↗ | a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › BCD1 | 0.53 | 43.0 | 3.14e-01 | 100.0% | 30.2% |
| 3526254 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 46.0 | 3.84e-01 | 100.0% | 60.0% |
| 3210551 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.52 | 44.0 | 4.02e-01 | 100.0% | 100.0% |
| 3640072 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.51 | 44.0 | 2.69e-01 | 100.0% | 30.5% |
| 3589327 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 44.0 | 4.14e-01 | 100.0% | 97.5% |
| 3508694 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 41.0 | 3.05e-01 | 100.0% | 47.5% |
| 4572391 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 42.0 | 3.23e-01 | 98.4% | 51.9% |