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NC_062753.1__YP_010357450.1__M1M31_gp08__00008
Bact-VirNC_062753.1__YP_010357450.1__M1M31_gp08__00008
Identity
- Accession:
- NC_062753 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Assiduviridae›
Nekkelsvirus›
Cellulophaga_phage_Nekkels_1
TaxID: 2745692
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-74
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xy7B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.64 | 53.0 | 4.35e-01 | 98.3% | 96.7% |
| 1twuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 46.0 | 3.55e-01 | 81.7% | 37.2% |
| 3b59A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 46.0 | 3.72e-01 | 85.0% | 92.6% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 39.0 | 4.08e-01 | 75.0% | 75.0% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 38.0 | 3.61e-01 | 80.0% | 55.7% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 39.0 | 3.77e-01 | 80.0% | 62.7% |
| 1b3qB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 41.0 | 4.03e-01 | 85.0% | 73.5% |
| 3sqfA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 39.0 | 3.46e-01 | 83.3% | 63.2% |
| 2ozpA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 35.0 | 2.67e-01 | 70.0% | 93.4% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 42.0 | 4.08e-01 | 96.7% | 89.9% |
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.51 | 41.0 | 3.35e-01 | 96.7% | 74.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1160864 | 211.1.1.20 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › At5g48480-like_C | 0.62 | 49.0 | 4.66e-01 | 91.7% | 96.0% |
| 3990859 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 40.0 | 4.18e-01 | 78.3% | 76.4% |
| 3738483 | 213.1.1.47 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Pho86 | 0.60 | 43.0 | 3.11e-01 | 76.7% | 64.7% |
| 4453332 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.60 | 44.0 | 3.65e-01 | 81.7% | 76.5% |
| 3625449 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 40.0 | 4.15e-01 | 80.0% | 76.4% |
| 4023011 | 2003.1.3.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 | 0.58 | 43.0 | 2.97e-01 | 81.7% | 47.5% |
| 4930200 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.56 | 43.0 | 3.42e-01 | 85.0% | 83.8% |
| 4988734 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.56 | 43.0 | 3.47e-01 | 83.3% | 89.8% |
| 3446806 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.56 | 38.0 | 3.42e-01 | 70.0% | 52.4% |
| 4385582 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.56 | 43.0 | 3.35e-01 | 85.0% | 84.4% |
| 4928660 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.56 | 41.0 | 3.86e-01 | 81.7% | 68.0% |
| 146118 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.54 | 42.0 | 3.53e-01 | 86.7% | 75.0% |
| 3038811 | 7521.1.1.2 ↗ | a/b three-layered sandwiches › B12-dependent dehydratase associated subunit › B12-dependent dehydratase associated subunit › B12-dependent dehydratase associated subunit › EutC | 0.53 | 44.0 | 2.92e-01 | 93.3% | 58.5% |
| 4990948 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.52 | 43.0 | 3.30e-01 | 98.3% | 55.6% |
| 3740447 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.50 | 36.0 | 2.24e-01 | 80.0% | 37.9% |