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NC_062753.1__YP_010357452.1__M1M31_gp10__00010

Bact-Vir

NC_062753.1__YP_010357452.1__M1M31_gp10__00010

Identity

Accession:
NC_062753 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Nekkelsvirus› Cellulophaga_phage_Nekkels_1

TaxID: 2745692

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.71 60.0 4.91e-01 100.0% 51.0%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 50.0 3.57e-01 81.8% 44.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 3.23e-01 100.0% 17.7%
3kioC01 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.56 41.0 3.55e-01 81.8% 64.5%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.56 38.0 3.24e-01 72.7% 41.1%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 38.0 3.27e-01 74.5% 46.1%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.56 42.0 4.11e-01 96.4% 73.8%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 46.0 3.52e-01 100.0% 93.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.55 46.0 3.54e-01 100.0% 97.9%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 38.0 3.51e-01 87.3% 55.0%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 41.0 4.13e-01 100.0% 82.5%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.71e-01 98.2% 23.1%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.53 37.0 2.95e-01 74.5% 85.3%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.53 42.0 3.10e-01 94.5% 74.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 44.0 3.51e-01 94.5% 46.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 45.0 3.34e-01 100.0% 71.4%
3pufL00 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.52 38.0 3.13e-01 81.8% 50.0%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.07e-01 76.4% 86.4%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.51 37.0 2.66e-01 78.2% 49.7%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 40.0 3.82e-01 100.0% 73.8%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 34.0 2.97e-01 72.7% 47.0%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 36.0 2.96e-01 80.0% 67.0%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.50 36.0 2.59e-01 76.4% 37.6%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 2.71e-01 78.2% 29.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008200 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 43.0 3.96e-01 72.7% 54.3%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.64 43.0 3.65e-01 76.4% 44.7%
3926158 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.61 48.0 3.33e-01 85.5% 54.9%
5018480 1104.1.1.0 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain 0.60 49.0 3.45e-01 92.7% 63.3%
3678022 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.59 51.0 3.57e-01 100.0% 41.6%
3782562 101.1.8.7 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.59 44.0 3.19e-01 81.8% 31.2%
3242625 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 40.0 3.25e-01 74.5% 40.9%
3990877 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.58 50.0 3.97e-01 98.2% 60.9%
3723461 4099.1.1.9 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 0.58 41.0 3.13e-01 78.2% 31.7%
3859372 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.57 41.0 3.34e-01 76.4% 41.9%
4990980 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 48.0 4.07e-01 100.0% 56.8%
5070684 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 46.0 3.28e-01 100.0% 31.0%
3867539 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 45.0 3.14e-01 100.0% 27.4%
3710585 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 43.0 3.43e-01 87.3% 67.5%
3660020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.61e-01 76.4% 63.0%
3964086 4056.1.1.10 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › ResB 0.54 49.0 3.82e-01 100.0% 76.5%
3509056 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.54 39.0 3.11e-01 80.0% 84.0%
5066083 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 37.0 2.52e-01 72.7% 33.0%
3586434 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.53 45.0 3.22e-01 94.5% 32.5%
3407209 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.53 38.0 2.73e-01 76.4% 27.4%
4171942 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.52 42.0 3.62e-01 100.0% 87.5%
3715886 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 2.76e-01 100.0% 20.8%
None — 0.52 36.0 3.17e-01 74.5% 52.9%
4005322 4018.1.1.3 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase_glpX 0.51 40.0 2.97e-01 90.9% 93.9%
3351249 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.51 34.0 2.66e-01 70.9% 36.0%
4194238 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.51 37.0 3.32e-01 78.2% 57.5%
7305 283.3.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › MK0786-like › MK0786-like › DHNA 0.51 35.0 2.91e-01 76.4% 83.3%
3241420 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 41.0 2.58e-01 96.4% 29.9%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.50 35.0 2.96e-01 74.5% 45.0%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 39.0 3.22e-01 92.7% 50.8%
4609138 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 44.0 3.26e-01 100.0% 36.7%
4547666 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.50 41.0 3.27e-01 96.4% 92.8%
4027851 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 37.0 2.77e-01 80.0% 96.6%