←Back to structures

NC_062753.1__YP_010357479.1__M1M31_gp37__00037

Bact-Vir

NC_062753.1__YP_010357479.1__M1M31_gp37__00037

Identity

Accession:
NC_062753 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Nekkelsvirus› Cellulophaga_phage_Nekkels_1

TaxID: 2745692

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-76
PDB
Domain cluster: rep: OR122689.1__WLI71753.1__CPTAKMNP4_131__00126__D6-69
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26894.1 best Phage_T4_Y07C 76.0 4.00e-21 100.0% 98.4%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 62.0 5.61e-01 100.0% 81.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 59.0 5.67e-01 100.0% 84.1%
4u9cA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.63 52.0 4.42e-01 91.8% 92.7%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.59 49.0 4.22e-01 94.5% 99.2%
4gm2A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.57 39.0 2.97e-01 71.2% 63.4%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 47.0 3.60e-01 100.0% 75.5%
5kfnA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 48.0 3.65e-01 100.0% 85.9%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.54 41.0 3.66e-01 82.2% 99.0%
3u4qA02 1.10.274.50 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.53 42.0 3.36e-01 86.3% 60.7%
4aefA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.14e-01 100.0% 46.6%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.01e-01 98.6% 35.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2771923 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.70 61.0 5.59e-01 100.0% 74.7%
3215641 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 51.0 4.50e-01 100.0% 56.2%
3289952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 51.0 4.86e-01 100.0% 70.0%
3240196 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.63e-01 100.0% 73.7%
3180378 10.9.1.3 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C 0.57 50.0 4.03e-01 100.0% 95.9%
3622513 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 43.0 4.62e-01 89.0% 100.0%
4028909 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 3.61e-01 100.0% 54.4%
3733095 2007.2.3.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase3 0.52 41.0 2.75e-01 89.0% 45.5%
4235013 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.51 40.0 3.35e-01 100.0% 46.4%
4436971 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.50 38.0 3.22e-01 100.0% 44.8%