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NC_062753.1__YP_010357482.1__M1M31_gp40__00040
Bact-VirNC_062753.1__YP_010357482.1__M1M31_gp40__00040
Identity
- Accession:
- NC_062753 ↗
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Assiduviridae›
Nekkelsvirus›
Cellulophaga_phage_Nekkels_1
TaxID: 2745692
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-121
Domain cluster:
rep: ON453900.1__WAK79495.1__X__00071__D15-114
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.71 | 59.0 | 6.18e-01 | 95.2% | 98.9% |
| 2vp7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 32.0 | 3.80e-01 | 85.6% | 78.8% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 36.0 | 3.79e-01 | 87.5% | 68.1% |
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.52 | 43.0 | 3.84e-01 | 90.4% | 93.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.80 | 46.0 | 5.92e-01 | 89.4% | 100.0% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.70 | 62.0 | 6.17e-01 | 99.0% | 93.6% |
| 4022276 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.55 | 40.0 | 2.76e-01 | 77.9% | 53.3% |
| 5029262 | 4114.1.1.0 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like | 0.53 | 40.0 | 3.89e-01 | 80.8% | 82.4% |
| 3695032 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.53 | 39.0 | 2.72e-01 | 78.8% | 94.3% |
| 4026153 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 32.0 | 3.87e-01 | 84.6% | 98.5% |
| 3486471 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 38.0 | 3.34e-01 | 81.7% | 87.9% |